myRT

myRT report for GCA_012555545.1_ASM1255554v1

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Seq: LXEL01000001.1 Escherichia coli strain S2-2 contig_1, whole genome shotgun sequence (3318542 bp)
Overview 1 RT 1: 363234-367525 bp 2 RT 2: 390892-395210 bp 3 RT 3: 2552887-2559674 bp 4 RT 4: 2646484-2653221 bp 5 RT 5: 3021616-3026314 bp Neighborhood of RT #1 [363234, 367525] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [390892, 395266] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [2552887, 2560564] Q RVT-Retrons RVT-AbiP2 Phage_GPA Neighborhood of RT #4 [2646484, 2653226] P Q RVT-Retrons DUF2971 DinI Neighborhood of RT #5 [3021616, 3026418] InsE PHA02517 RVT-GII GIIM PHA02517 Phage_integrase Feature: gene Location: 363234-364496 bp Feature: domain Description: YesM Location: 363747-364488 bp Feature: domain Description: YesM Location: 363747-364488 bp Feature: gene Location: 364526-364696 bp Feature: gene Location: 365046-365567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365052-365334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365052-365334 bp Feature: domain Description: GIIM Note: maturase Location: 365382-365562 bp Feature: domain Description: GIIM Note: maturase Location: 365382-365562 bp Feature: gene Location: 365595-366134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365925-366003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365925-366003 bp Feature: gene Location: 366165-366362 bp Feature: gene Location: 366620-367525 bp Feature: gene Location: 390892-391716 bp Feature: gene Location: 391843-392133 bp Feature: domain Description: PHA02517 Location: 391849-392068 bp Feature: domain Description: PHA0251 7 Location: 391 849-392068 bp Feature: gene Location: 392725-394248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392998-393730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392998-393730 bp Feature: domain Description: GIIM Note: maturase Location: 393805-394003 bp Feature: domain Description: GIIM Note: maturase Location: 393805-394003 bp Feature: gene Location: 394425-394811 bp Feature: domain Description: PHA02517 Location: 394428-394809 bp Feature: domain Description: PHA0251 7 Location: 394428-394809 bp Feature: gene Location: 394916-395266 bp Feature: domain Description: InsE Location: 394925-395210 bp Feature: domain Description: InsE Location: 394925-39521 0 bp Feature: gene Location: 2552887-2553906 bp Feature: domain Description: Q Location: 2552890-2553901 bp Feature: domain Description: Q Location: 2552890-2553901 bp Feature: gene Location: 2553949-2554656 bp Feature: gene Location: 2554653-2555843 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2554803-2555385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2554803-2555385 bp Feature: gene Location: 2556394-2557938 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2556811-2557264 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 255681 1 -2557264 bp Feature: gene Location: 2558104-2558364 bp Feature: gene Location: 2558426-2560564 bp Feature: domain Description: Phage_GPA Location: 2558687-2559674 bp Feature: domain Description: Phage_GPA Location: 2558687-2559674 bp Feature: gene Location: 2646484-2648250 bp Feature: domain Description: P Location: 2646511-2648245 bp Feature: domain Description: P Location: 264651 1 -2648245 bp Feature: gene Location: 2648250-2649281 bp Feature: domain Description: Q Location: 2648253-2649276 bp Feature: domain Description: Q Location: 2648253-2649276 bp Feature: gene Location: 2649331-2651088 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2649475-2650096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2649475-2650096 bp Feature: gene Location: 2651490-2652608 bp Feature: domain Description: DUF2971 Location: 2651997-2652255 bp Feature: domain Description: DUF2971 Location: 2651 997-2652255 bp Feature: gene Location: 2652993-2653226 bp Feature: domain Description: DinI Location: 2653035-2653221 bp Feature: domain Description: DinI Location: 2653035-2653221 bp Feature: gene Location: 3021616-3021942 bp Feature: domain Description: InsE Location: 3021619-3021940 bp Feature: domain Description: InsE Location: 3021 61 9-3021 940 bp Feature: gene Location: 3021942-3022421 bp Feature: domain Description: PHA02517 Location: 3022002-3022356 bp Feature: domain Description: PHA0251 7 Location: 3022002-3022356 bp Feature: gene Location: 3023013-3024536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3023286-3024018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3023286-302401 8 bp Feature: domain Description: GIIM Note: maturase Location: 3024093-3024291 bp Feature: domain Description: GIIM Note: maturase Location: 3024093-3024291 bp Feature: gene Location: 3024713-3025099 bp Feature: domain Description: PHA02517 Location: 3024716-3025097 bp Feature: domain Description: PHA0251 7 Location: 302471 6-3025097 bp Feature: gene Location: 3025255-3026418 bp Feature: domain Description: Phage_integrase Location: 3025810-3026314 bp Feature: domain Description: Phage_integrase Location: 302581 0-302631 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840), P (PHA02535)
DUF2971 (pfam11185), DinI (pfam06183), Phage_integrase (pfam00589)