myRT

myRT report for GCA_012583295.1_ASM1258329v1

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Seq: VIRO01000076.1 Cylindrospermopsis raciborskii MVCC19 NODE_292_length_55020_cov_0.215528_ID_983869, whole genome shotgun sequence (55020 bp)
Overview 1 RT 1: 2125-7421 bp Neighborhood of RT #1 [2125, 7429] N_methyl Pilin_GH KOG0404 RVT_N RVT-GII GIIM KOG0404 TRX_NTR DppC Feature: gene Location: 2125-2649 bp Feature: domain Description: N_methyl Location: 2185-2254 bp Feature: domain Description: N_methyl Location: 21 85-2254 bp Feature: domain Description: Pilin_GH Location: 2290-2617 bp Feature: domain Description: Pilin_GH Location: 2290-261 7 bp Feature: gene Location: 2863-3051 bp Feature: domain Description: KOG0404 Location: 2893-3040 bp Feature: domain Description: KOG0404 Location: 2893-3040 bp Feature: gene Location: 3687-5153 bp Feature: RT Description: RVT_N Location: 3771-3954 bp Feature: RT Description: RVT_N Location: 3771 -3954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4035-4659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4035-4659 bp Feature: domain Description: GIIM Note: maturase Location: 4803-5028 bp Feature: domain Description: GIIM Note: maturase Location: 4803-5028 bp Feature: gene Location: 5359-6513 bp Feature: domain Description: KOG0404 Location: 5362-6094 bp Feature: domain Description: KOG0404 Location: 5362-6094 bp Feature: domain Description: TRX_NTR Location: 6214-6499 bp Feature: domain Description: TRX_NTR Location: 621 4-6499 bp Feature: gene Location: 6569-7429 bp Feature: domain Description: DppC Location: 6605-7421 bp Feature: domain Description: DppC Location: 6605-7421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N_methyl (pfam07963), Pilin_GH (pfam16734), KOG0404 (KOG0404, Thioredoxin reductase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TRX_NTR (cd02949), DppC (COG1173)

Seq: VIRO01000124.1 Cylindrospermopsis raciborskii MVCC19 NODE_51_length_259706_cov_0.211708_ID_983263, whole genome shotgun sequence (259706 bp)
Overview 1 RT 1: 37711-44313 bp Neighborhood of RT #1 [37711, 44327] MviM QueC RVT_N RVT-GII GIIM DUF3157 TlyC Feature: gene Location: 37711-38841 bp Feature: domain Description: MviM Location: 37828-38779 bp Feature: domain Description: MviM Location: 3782 8-38779 bp Feature: gene Location: 38990-39670 bp Feature: domain Description: QueC Location: 38993-39656 bp Feature: domain Description: QueC Location: 38993-39656 bp Feature: gene Location: 39803-41479 bp Feature: RT Description: RVT_N Location: 39830-40058 bp Feature: RT Description: RVT_N Location: 39830-40058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40094-40754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40094-40754 bp Feature: domain Description: GIIM Note: maturase Location: 40856-41087 bp Feature: domain Description: GIIM Note: maturase Location: 40856-41087 bp Feature: gene Location: 42145-42849 bp Feature: domain Description: DUF3157 Location: 42526-42676 bp Feature: domain Description: DUF3157 Location: 42 52 6-42 676 bp Feature: gene Location: 42945-44327 bp Feature: domain Description: TlyC Location: 42984-44313 bp Feature: domain Description: TlyC Location: 42 984-44313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), QueC (pfam06508), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3157 (pfam11355), TlyC (COG1253)

Seq: VIRO01000141.1 Cylindrospermopsis raciborskii MVCC19 NODE_69_length_219656_cov_0.217579_ID_983323, whole genome shotgun sequence (219656 bp)
Overview 1 RT 1: 22564-27702 bp 2 RT 2: 64356-67859 bp Neighborhood of RT #1 [22564, 27707] DUF3598 RTPR YkfC RVT-GII GIIM RNR_II_monomer Neighborhood of RT #2 [64356, 67870] HEAT CpeS RVT_N RVT-GII GIIM CpeS cyt_b559_alpha Feature: gene Location: 22564-23418 bp Feature: domain Description: DUF3598 Location: 22573-23404 bp Feature: domain Description: DUF3 598 Location: 22573 -23 404 bp Feature: gene Location: 23442-25397 bp Feature: domain Description: RTPR Location: 23445-25371 bp Feature: domain Description: RTPR Location: 23 445-253 71 bp Feature: gene Location: 25581-26852 bp Feature: domain Description: YkfC Location: 25629-25785 bp Feature: domain Description: YkfC Location: 25629-25785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25788-26394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25788-263 94 bp Feature: domain Description: GIIM Note: maturase Location: 26475-26709 bp Feature: domain Description: GIIM Note: maturase Location: 26475-26709 bp Feature: gene Location: 26879-27031 bp Feature: gene Location: 27444-27707 bp Feature: domain Description: RNR_II_monomer Location: 27507-27702 bp Feature: domain Description: RNR_II_monomer Location: 27507-27702 bp Feature: gene Location: 64356-65024 bp Feature: domain Description: HEAT Location: 64371-65007 bp Feature: domain Description: HEAT Location: 643 71-65007 bp Feature: gene Location: 65141-65407 bp Feature: domain Description: CpeS Location: 65147-65375 bp Feature: domain Description: CpeS Location: 65147-653 75 bp Feature: gene Location: 65930-67051 bp Feature: RT Description: RVT_N Location: 65966-66137 bp Feature: RT Description: RVT_N Location: 65966-6613 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66155-66671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66155-66671 bp Feature: domain Description: GIIM Note: maturase Location: 66731-66923 bp Feature: domain Description: GIIM Note: maturase Location: 6673 1-66923 bp Feature: gene Location: 67205-67468 bp Feature: domain Description: CpeS Location: 67208-67415 bp Feature: domain Description: CpeS Location: 67208-67415 bp Feature: gene Location: 67622-67870 bp Feature: domain Description: cyt_b559_alpha Location: 67628-67859 bp Feature: domain Description: cyt_b559_alpha Location: 67628-67859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3598 (pfam12204), RTPR (TIGR02505), YkfC (COG3344), RVT-GII, GIIM (pfam08388), RNR_II_monomer (cd01676), HEAT (sd00044), CpeS (pfam09367), RVT_N (pfam13655), cyt_b559_alpha (TIGR01332)