myRT

myRT report for GCA_012583345.1_ASM1258334v1

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Seq: VOIM01000024.1 Cylindrospermopsis raciborskii LB2897 NODE_125_length_9143_cov_4.870105, whole genome shotgun sequence (9143 bp)
Overview 1 RT 1: 3742-9031 bp Neighborhood of RT #1 [3742, 9063] DppC KOG0404 TRX_NTR RVT_N RVT-GII GIIM KOG0404 N_methyl Pilin_GH Feature: gene Location: 3742-4602 bp Feature: domain Description: DppC Location: 3778-4594 bp Feature: domain Description: DppC Location: 3778-4594 bp Feature: gene Location: 4723-5811 bp Feature: domain Description: KOG0404 Location: 4726-5458 bp Feature: domain Description: KOG0404 Location: 4726-5458 bp Feature: domain Description: TRX_NTR Location: 5578-5806 bp Feature: domain Description: TRX_NTR Location: 5578-5806 bp Feature: gene Location: 5999-7504 bp Feature: RT Description: RVT_N Location: 6083-6266 bp Feature: RT Description: RVT_N Location: 6083-6266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6347-6989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6347-6989 bp Feature: domain Description: GIIM Note: maturase Location: 7130-7358 bp Feature: domain Description: GIIM Note: maturase Location: 71 30-7358 bp Feature: gene Location: 8157-8345 bp Feature: domain Description: KOG0404 Location: 8187-8334 bp Feature: domain Description: KOG0404 Location: 81 87-8334 bp Feature: gene Location: 8560-9063 bp Feature: domain Description: N_methyl Location: 8620-8689 bp Feature: domain Description: N_methyl Location: 8620-8689 bp Feature: domain Description: Pilin_GH Location: 8725-9031 bp Feature: domain Description: Pilin_GH Location: 8725-9031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppC (COG1173), KOG0404 (KOG0404, Thioredoxin reductase ), TRX_NTR (cd02949), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N_methyl (pfam07963), Pilin_GH (pfam16734)

Seq: VOIM01000134.1 Cylindrospermopsis raciborskii LB2897 NODE_2_length_82258_cov_4.685105, whole genome shotgun sequence (82258 bp)
Overview 1 RT 1: 17850-21349 bp Neighborhood of RT #1 [17850, 21349] QueC RVT-GII GIIM RVT_N Feature: gene Location: 17850-17984 bp Feature: gene Location: 17987-18667 bp Feature: domain Description: QueC Location: 17990-18653 bp Feature: domain Description: QueC Location: 17990-18653 bp Feature: gene Location: 18800-20116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18803-19391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18803-19391 bp Feature: domain Description: GIIM Note: maturase Location: 19493-19724 bp Feature: domain Description: GIIM Note: maturase Location: 19493-1972 4 bp Feature: gene Location: 20290-20484 bp Feature: RT Description: RVT_N Location: 20317-20470 bp Feature: RT Description: RVT_N Location: 2 0317-2 0470 bp Feature: gene Location: 21086-21349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QueC (pfam06508), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: VOIM01000161.1 Cylindrospermopsis raciborskii LB2897 NODE_51_length_21450_cov_3.918956, whole genome shotgun sequence (21450 bp)
Overview 1 RT 1: 808-4139 bp Neighborhood of RT #1 [808, 4147] COG1543 YkfC RVT-GII GIIM RNR_II_monomer RTPR Feature: gene Location: 808-948 bp Feature: domain Description: COG1543 Location: 817-895 bp Feature: domain Description: COG1543 Location: 817-895 bp Feature: gene Location: 1075-1227 bp Feature: gene Location: 1254-2525 bp Feature: domain Description: YkfC Location: 1302-1458 bp Feature: domain Description: YkfC Location: 13 02-1458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461-2067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461-2067 bp Feature: domain Description: GIIM Note: maturase Location: 2148-2382 bp Feature: domain Description: GIIM Note: maturase Location: 2148-23 82 bp Feature: gene Location: 2706-3512 bp Feature: domain Description: RNR_II_monomer Location: 2709-3453 bp Feature: domain Description: RNR_II_monomer Location: 2709-3 453 bp Feature: gene Location: 3530-4147 bp Feature: domain Description: RTPR Location: 3545-4139 bp Feature: domain Description: RTPR Location: 3 545-413 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388), RNR_II_monomer (cd01676), RTPR (TIGR02505), COG1543 (Predicted glycosyl hydrolase, contains GH57 and DUF1957 domains )