myRT

myRT report for GCA_012641165.1_ASM1264116v1

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Seq: JABAJL010000033.1 Escherichia coli strain SECR18-0888 Scaffold_33, whole genome shotgun sequence (43860 bp)
Overview 1 RT 1: 34764-40767 bp Neighborhood of RT #1 [34764, 40784] Phage_int_SAM_5 INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 34764-36128 bp Feature: domain Description: Phage_int_SAM_5 Location: 35163-35400 bp Feature: domain Description: Phage_int_SAM_5 Location: 351 63-35400 bp Feature: domain Description: INT_C_like_1 Location: 35496-36012 bp Feature: domain Description: INT_C_like_1 Location: 35496-3601 2 bp Feature: gene Location: 36367-37551 bp Feature: domain Description: PRK09692 Location: 36373-37528 bp Feature: domain Description: PRK09692 Location: 36373-37528 bp Feature: gene Location: 37544-39172 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 37952-38381 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 37952-38381 bp Feature: gene Location: 39169-39909 bp Feature: gene Location: 40212-40784 bp Feature: domain Description: Psu Location: 40230-40767 bp Feature: domain Description: Psu Location: 40230-40767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: JABAJL010000062.1 Escherichia coli strain SECR18-0888 Scaffold_62, whole genome shotgun sequence (18565 bp)
Overview 1 RT 1: 47-3141 bp 2 RT 2: 12344-16326 bp Neighborhood of RT #1 [47, 3158] RVT-GII GIIM PHA02517 FadR Neighborhood of RT #2 [12344, 16352] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 47-418 bp Feature: gene Location: 712-2235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: domain Description: GIIM Note: maturase Location: 1792 -1990 bp Feature: gene Location: 2364-2804 bp Feature: domain Description: PHA02517 Location: 2367-2775 bp Feature: domain Description: PHA02 517 Location: 2 367-2 775 bp Feature: gene Location: 3024-3158 bp Feature: domain Description: FadR Location: 3039-3141 bp Feature: domain Description: FadR Location: 3039-3141 bp Feature: gene Location: 12344-13375 bp Feature: domain Description: Asparaginase_2 Location: 12434-13367 bp Feature: domain Description: Asparaginase_2 Location: 12 434-13367 bp Feature: gene Location: 13702-13851 bp Feature: gene Location: 13899-14345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14205-14307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 05-14307 bp Feature: gene Location: 14567-14938 bp Feature: gene Location: 14991-16352 bp Feature: domain Description: DcuC Location: 14994-16326 bp Feature: domain Description: DcuC Location: 14994-1632 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), FadR (COG2186), Asparaginase_2 (pfam01112), DcuC (TIGR00771)