myRT

myRT report for GCA_012641295.1_ASM1264129v1

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Seq: JABAIB010000010.1 Chitinophaga polysaccharea strain Bc7 Bc7-scaffold_10_length_343772_cov_110.303, whole genome shotgun sequence (343772 bp)
Overview 1 RT 1: 58344-65557 bp Neighborhood of RT #1 [58344, 65557] CpsB RVT-GII GIIM Uup ABC_tran_CTD Feature: gene Location: 58344-59426 bp Feature: domain Description: CpsB Location: 58368-59352 bp Feature: domain Description: CpsB Location: 58368-59352 bp Feature: gene Location: 59637-61223 bp Feature: gene Location: 61359-62033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61362-61569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 362-61 569 bp Feature: domain Description: GIIM Note: maturase Location: 61626-61848 bp Feature: domain Description: GIIM Note: maturase Location: 61 626-61 848 bp Feature: gene Location: 62177-64081 bp Feature: domain Description: Uup Location: 62180-63779 bp Feature: domain Description: Uup Location: 621 80-63779 bp Feature: domain Description: ABC_tran_CTD Location: 63872-64070 bp Feature: domain Description: ABC_tran_CTD Location: 63872-64070 bp Feature: gene Location: 64160-65557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CpsB (COG0836), RVT-GII, GIIM (pfam08388), Uup (COG0488), ABC_tran_CTD (pfam16326)

Seq: JABAIB010000004.1 Chitinophaga polysaccharea strain Bc7 Bc7-scaffold_4_length_934163_cov_106.747, whole genome shotgun sequence (934163 bp)
Overview 1 RT 1: 561851-566948 bp Neighborhood of RT #1 [561851, 566959] RVT-CRISPR-like YdeI Feature: gene Location: 561851-562423 bp Feature: gene Location: 562684-562836 bp Feature: gene Location: 563008-564432 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 563296-563896 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5632 96-563896 bp Feature: gene Location: 564715-565779 bp Feature: gene Location: 566381-566959 bp Feature: domain Description: YdeI Location: 566405-566948 bp Feature: domain Description: YdeI Location: 566405-566948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, YdeI (COG4430)

Seq: JABAIB010000006.1 Chitinophaga polysaccharea strain Bc7 Bc7-scaffold_6_length_668248_cov_101.343, whole genome shotgun sequence (668248 bp)
Overview 1 RT 1: 42984-51455 bp Neighborhood of RT #1 [42984, 54235] MET2 CirA RVT-Retrons WGR_DNA_ligase HEAT_2 Feature: gene Location: 42984-44027 bp Feature: domain Description: MET2 Location: 43014-44019 bp Feature: domain Description: MET2 Location: 43 014-44019 bp Feature: gene Location: 44219-47083 bp Feature: domain Description: CirA Location: 44495-47042 bp Feature: domain Description: CirA Location: 44495-47042 bp Feature: gene Location: 47174-48781 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47717-48332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47717-483 3 2 bp Feature: gene Location: 49251-50891 bp Feature: gene Location: 50906-54235 bp Feature: domain Description: WGR_DNA_ligase Location: 50924-51137 bp Feature: domain Description: WGR_DNA_ligase Location: 50924-5113 7 bp Feature: domain Description: HEAT_2 Location: 51236-51455 bp Feature: domain Description: HEAT_2 Location: 5123 6-51455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MET2 (COG2021), CirA (COG1629), RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646)