myRT

myRT report for GCA_012689405.1_ASM1268940v1

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Seq: JABANK010000055.1 Vibrio aestuarianus subsp. francensis strain 01/308 Contig109, whole genome shotgun sequence (1500571 bp)
Overview 1 RT 1: 1038035-1043922 bp Neighborhood of RT #1 [1038035, 1044008] DUF2913 RVT_N RVT-GII AcrB RND_mfp Feature: gene Location: 1038035-1038421 bp Feature: domain Description: DUF2913 Location: 1038041-1038347 bp Feature: domain Description: DUF291 3 Location: 1 038041 -1 038347 bp Feature: gene Location: 1038539-1038727 bp Feature: gene Location: 1039009-1039389 bp Feature: RT Description: RVT_N Location: 1039015-1039219 bp Feature: RT Description: RVT_N Location: 1 03901 5-1 03921 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039264-1039330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 039264-1 039330 bp Feature: gene Location: 1039585-1042692 bp Feature: domain Description: AcrB Location: 1039588-1042645 bp Feature: domain Description: AcrB Location: 1 039588-1 042645 bp Feature: gene Location: 1042689-1044008 bp Feature: domain Description: RND_mfp Location: 1042824-1043922 bp Feature: domain Description: RND_mfp Location: 1 042824-1 043922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2913 (pfam11140), RVT_N (pfam13655), RVT-GII, AcrB (COG0841), RND_mfp (TIGR01730)

Seq: JABANK010000039.1 Vibrio aestuarianus subsp. francensis strain 01/308 Contig90, whole genome shotgun sequence (12465 bp)
Overview 1 RT 1: 8030-11970 bp Neighborhood of RT #1 [8030, 12371] Hypoth_Ymh AAA_15 AAA_15 RVT-Retrons Feature: gene Location: 8030-8830 bp Feature: domain Description: Hypoth_Ymh Location: 8450-8810 bp Feature: domain Description: Hypoth_Ymh Location: 8450-8810 bp Feature: gene Location: 8978-11095 bp Feature: domain Description: AAA_15 Location: 8981-9398 bp Feature: domain Description: AAA_15 Location: 8981-9398 bp Feature: domain Description: AAA_15 Location: 9533-9962 bp Feature: domain Description: AAA_15 Location: 9533-9962 bp Feature: gene Location: 11271-12371 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11415-11970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11415-11970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Hypoth_Ymh (pfam09509), AAA_15 (pfam13175)