myRT

myRT report for GCA_012689435.1_ASM1268943v1

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Seq: SNUC01000121.1 Bradyrhizobium brasilense strain UFLA0613 NODE_121_length_13111_cov_14.525647, whole genome shotgun sequence (13111 bp)
Overview 1 RT 1: 4731-7301 bp Neighborhood of RT #1 [4731, 7301] DDE_Tnp_IS66 RVT-GII GIIM RVT-GII Feature: gene Location: 4731-4898 bp Feature: gene Location: 4937-5077 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4940-5045 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4940-5045 bp Feature: gene Location: 5258-6016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5264-5624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5264-5624 bp Feature: domain Description: GIIM Note: maturase Location: 5711-5921 bp Feature: domain Description: GIIM Note: maturase Location: 571 1 -5921 bp Feature: gene Location: 6103-6510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6310-6478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 631 0-6478 bp Feature: gene Location: 6725-6853 bp Feature: gene Location: 7026-7301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: SNUC01000138.1 Bradyrhizobium brasilense strain UFLA0613 NODE_138_length_6295_cov_14.043450, whole genome shotgun sequence (6295 bp)
Overview 1 RT 1: 220-2588 bp Neighborhood of RT #1 [220, 2588] DDE_Tnp_1_4 RVT-GII RVT-GII Feature: gene Location: 220-675 bp Feature: domain Description: DDE_Tnp_1_4 Location: 256-430 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2 56-430 bp Feature: gene Location: 774-1532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792 -1155 bp Feature: gene Location: 1493-1765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1496-1754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1496-1754 bp Feature: gene Location: 1887-2189 bp Feature: gene Location: 2259-2588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1_4 (pfam13701)

Seq: SNUC01000163.1 Bradyrhizobium brasilense strain UFLA0613 NODE_163_length_2034_cov_12.301521, whole genome shotgun sequence (2034 bp)
Overview 1 RT 1: 505-1995 bp Neighborhood of RT #1 [505, 1997] RVT-GII Feature: gene Location: 505-684 bp Feature: gene Location: 1042-1236 bp Feature: gene Location: 1278-1997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605-1995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605-1995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SNUC01000002.1 Bradyrhizobium brasilense strain UFLA0613 NODE_2_length_286018_cov_12.122151, whole genome shotgun sequence (286018 bp)
Overview 1 RT 1: 186609-190104 bp Neighborhood of RT #1 [186609, 190109] RVT-GII Intron_maturas2 DUF3606 Feature: gene Location: 186609-186743 bp Feature: gene Location: 186765-187448 bp Feature: gene Location: 187448-189310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187715-188546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187715-18854 6 bp Feature: domain Description: Intron_maturas2 Location: 188654-188939 bp Feature: domain Description: Intron_maturas2 Location: 188654 -188939 bp Feature: gene Location: 189616-189894 bp Feature: gene Location: 189921-190109 bp Feature: domain Description: DUF3606 Location: 189948-190104 bp Feature: domain Description: DUF3606 Location: 18994 8-190104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DUF3606 (pfam12244)

Seq: SNUC01000034.1 Bradyrhizobium brasilense strain UFLA0613 NODE_34_length_79101_cov_12.447641, whole genome shotgun sequence (79101 bp)
Overview 1 RT 1: 17353-21063 bp Neighborhood of RT #1 [17353, 21191] Trypsin_2 RVT-Retrons HTH_ARSR COG3177 Feature: gene Location: 17353-17505 bp Feature: gene Location: 17854-18681 bp Feature: domain Description: Trypsin_2 Location: 18199-18601 bp Feature: domain Description: Trypsin_2 Location: 18199-18601 bp Feature: gene Location: 18687-19451 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18846-19296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18846-19296 bp Feature: gene Location: 19577-19753 bp Feature: gene Location: 19878-21191 bp Feature: domain Description: HTH_ARSR Location: 19890-20085 bp Feature: domain Description: HTH_ARSR Location: 19890-20085 bp Feature: domain Description: COG3177 Location: 20277-21063 bp Feature: domain Description: COG3177 Location: 20277-21063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), RVT-Retrons, HTH_ARSR (smart00418), COG3177 (Fic family protein )

Seq: SNUC01000093.1 Bradyrhizobium brasilense strain UFLA0613 NODE_93_length_25493_cov_12.529173, whole genome shotgun sequence (25493 bp)
Overview 1 RT 1: 14591-18448 bp Neighborhood of RT #1 [14591, 19647] FMN_nitrolo HTH_23 RVT-GII DDE_Tnp_IS66_C Tnp_DNA_bind Feature: gene Location: 14591-15949 bp Feature: domain Description: FMN_nitrolo Location: 14618-15890 bp Feature: domain Description: FMN_nitrolo Location: 146 18-15890 bp Feature: gene Location: 16633-16881 bp Feature: domain Description: HTH_23 Location: 16705-16810 bp Feature: domain Description: HTH_23 Location: 16 705-16 810 bp Feature: gene Location: 16907-17275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17087-17234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17087-17234 bp Feature: gene Location: 17401-17778 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 17557-17626 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 17557-176 26 bp Feature: gene Location: 18214-19647 bp Feature: domain Description: Tnp_DNA_bind Location: 18280-18448 bp Feature: domain Description: Tnp_DNA_bind Location: 18280-18448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FMN_nitrolo (TIGR03860), HTH_23 (pfam13384), RVT-GII, DDE_Tnp_IS66_C (pfam13817), Tnp_DNA_bind (pfam14706)

Seq: SNUC01000094.1 Bradyrhizobium brasilense strain UFLA0613 NODE_94_length_25075_cov_12.484047, whole genome shotgun sequence (25075 bp)
Overview 1 RT 1: 16923-21339 bp Neighborhood of RT #1 [16923, 21401] DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Feature: gene Location: 16923-17099 bp Feature: gene Location: 17227-17952 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17245-17680 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17 245-17 680 bp Feature: gene Location: 18189-19517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18480-19143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18480-19143 bp Feature: domain Description: GIIM Note: maturase Location: 19209-19431 bp Feature: domain Description: GIIM Note: maturase Location: 19209-19431 bp Feature: gene Location: 19453-20289 bp Feature: domain Description: LomR Location: 19489-20200 bp Feature: domain Description: LomR Location: 19489-20200 bp Feature: gene Location: 20733-21401 bp Feature: domain Description: PHA02518 Location: 20742-21339 bp Feature: domain Description: PHA02518 Location: 207 42-21339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), LomR (COG3637), PHA02518 (ParA-like protein; Provisional)

Seq: SNUC01000095.1 Bradyrhizobium brasilense strain UFLA0613 NODE_95_length_24975_cov_11.840913, whole genome shotgun sequence (24975 bp)
Overview 1 RT 1: 19878-24466 bp Neighborhood of RT #1 [19878, 24870] HU_IHF DUF772 DDE_Tnp_1 DDE_Tnp_1 RVT-GII GIIM PHA00617 Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 19878-20156 bp Feature: domain Description: HU_IHF Location: 19893-20142 bp Feature: domain Description: HU_IHF Location: 198 93-20142 bp Feature: gene Location: 20394-21740 bp Feature: domain Description: DUF772 Location: 20553-20769 bp Feature: domain Description: DUF772 Location: 20553-20769 bp Feature: domain Description: DDE_Tnp_1 Location: 21222-21441 bp Feature: domain Description: DDE_Tnp_1 Location: 21222-21441 bp Feature: domain Description: DDE_Tnp_1 Location: 21513-21630 bp Feature: domain Description: DDE_Tnp_1 Location: 21513-21630 bp Feature: gene Location: 21909-23057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22200-22443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22200-22443 bp Feature: domain Description: GIIM Note: maturase Location: 22494-22692 bp Feature: domain Description: GIIM Note: maturase Location: 22494-22692 bp Feature: gene Location: 22868-23197 bp Feature: domain Description: PHA00617 Location: 22994-23180 bp Feature: domain Description: PHA00617 Location: 22994-2318 0 bp Feature: gene Location: 23338-24870 bp Feature: domain Description: Resolvase Location: 23350-23791 bp Feature: domain Description: Resolvase Location: 23350-23791 bp Feature: domain Description: Recombinase Location: 23878-24238 bp Feature: domain Description: Recombinase Location: 238 78 -24238 bp Feature: domain Description: Zn_ribbon_recom Location: 24280-24466 bp Feature: domain Description: Zn_ribbon_recom Location: 2428 0-24466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU_IHF (cl00257), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)