myRT

myRT report for GCA_012719125.1_ASM1271912v1

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Seq: JAAYAY010000070.1 Planctomycetaceae bacterium isolate AS06rmzACSIP_219 117222_AS06, whole genome shotgun sequence (29503 bp)
Overview 1 RT 1: 922-4435 bp Neighborhood of RT #1 [922, 4464] RVT-Retrons tgt TPR TPR TPR RNA_pol_A_CTD RNA_pol_A_CTD Feature: gene Location: 922-1893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1045-1669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 045-1 669 bp Feature: gene Location: 1921-3072 bp Feature: domain Description: tgt Location: 1939-3010 bp Feature: domain Description: tgt Location: 1 939-301 0 bp Feature: gene Location: 3142-4464 bp Feature: domain Description: TPR Location: 3328-3385 bp Feature: domain Description: TPR Location: 3328-3385 bp Feature: domain Description: TPR Location: 3403-3730 bp Feature: domain Description: TPR Location: 3403-3730 bp Feature: domain Description: TPR Location: 3817-3910 bp Feature: domain Description: TPR Location: 381 7-391 0 bp Feature: domain Description: RNA_pol_A_CTD Location: 3988-4174 bp Feature: domain Description: RNA_pol_A_CTD Location: 3988-41 74 bp Feature: domain Description: RNA_pol_A_CTD Location: 4252-4435 bp Feature: domain Description: RNA_pol_A_CTD Location: 4252-4435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, tgt (PRK00112), TPR (smart00028), RNA_pol_A_CTD (pfam03118)

Seq: JAAYAY010000082.1 Planctomycetaceae bacterium isolate AS06rmzACSIP_219 139242_AS06, whole genome shotgun sequence (2355 bp)
Overview 1 RT 1: 56-2355 bp Neighborhood of RT #1 [56, 2354] COG5421 RVT-GII Feature: gene Location: 56-1816 bp Feature: domain Description: COG5421 Location: 449-1640 bp Feature: domain Description: COG542 1 Location: 449-1640 bp Feature: gene Location: 1749-1925 bp Feature: gene Location: 2205-2354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229-2355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 2 9-2 355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5421 (Transposase ), RVT-GII

Seq: JAAYAY010000168.1 Planctomycetaceae bacterium isolate AS06rmzACSIP_219 295253_AS06, whole genome shotgun sequence (44616 bp)
Overview 1 RT 1: 22995-25217 bp Neighborhood of RT #1 [22995, 25217] RVT-Retrons Feature: gene Location: 22995-23159 bp Feature: gene Location: 23264-23602 bp Feature: gene Location: 23616-24554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23685-24216 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 685-24216 bp Feature: gene Location: 24593-24883 bp Feature: gene Location: 24969-25217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JAAYAY010000354.1 Planctomycetaceae bacterium isolate AS06rmzACSIP_219 621050_AS06, whole genome shotgun sequence (16887 bp)
Overview 1 RT 1: 1565-12233 bp Neighborhood of RT #1 [1565, 12244] STKc_PknB_like AAA_16 BTRD1 BTRD1 TPR FGE-sulfatase Avd_like RVT-DGRs HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind Sigma70_ECF Feature: gene Location: 1565-7774 bp Feature: domain Description: STKc_PknB_like Location: 2012-2789 bp Feature: domain Description: STKc_PknB_like Location: 2012-2789 bp Feature: domain Description: AAA_16 Location: 3014-3284 bp Feature: domain Description: AAA_16 Location: 3014 -3284 bp Feature: domain Description: BTRD1 Location: 5156-5273 bp Feature: domain Description: BTRD1 Location: 5156-5273 bp Feature: domain Description: BTRD1 Location: 5282-5435 bp Feature: domain Description: BTRD1 Location: 5282-54 35 bp Feature: domain Description: TPR Location: 5723-5969 bp Feature: domain Description: TPR Location: 5723-5969 bp Feature: domain Description: FGE-sulfatase Location: 6974-7754 bp Feature: domain Description: FGE-sulfatase Location: 6974 -7754 bp Feature: gene Location: 7892-8233 bp Feature: domain Description: Avd_like Location: 7919-8225 bp Feature: domain Description: Avd_like Location: 7919-8225 bp Feature: gene Location: 8240-9394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8450-9089 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 84 50-9089 bp Feature: gene Location: 9711-11306 bp Feature: domain Description: HemolysinCabind Location: 10038-10083 bp Feature: domain Description: HemolysinCabind Location: 10038-10083 bp Feature: domain Description: HemolysinCabind Location: 10107-10206 bp Feature: domain Description: HemolysinCabind Location: 10107-10206 bp Feature: domain Description: HemolysinCabind Location: 10212-10317 bp Feature: domain Description: HemolysinCabind Location: 10212-10317 bp Feature: domain Description: HemolysinCabind Location: 10320-10410 bp Feature: domain Description: HemolysinCabind Location: 10320-104 10 bp Feature: domain Description: HemolysinCabind Location: 10425-10503 bp Feature: domain Description: HemolysinCabind Location: 104 25-10503 bp Feature: domain Description: HemolysinCabind Location: 10512-10572 bp Feature: domain Description: HemolysinCabind Location: 10512-10572 bp Feature: gene Location: 11630-12244 bp Feature: domain Description: Sigma70_ECF Location: 11645-12233 bp Feature: domain Description: Sigma70_ECF Location: 1164 5-12233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), AAA_16 (pfam13191), BTRD1 (pfam17660), TPR (smart00028), FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, HemolysinCabind (pfam00353), Sigma70_ECF (pfam07638)

Seq: JAAYAY010000364.1 Planctomycetaceae bacterium isolate AS06rmzACSIP_219 627832_AS06, whole genome shotgun sequence (104314 bp)
Overview 1 RT 1: 84744-91095 bp Neighborhood of RT #1 [84744, 91095] eubact_ribD KOG0409 RVT-Retrons SWIM Feature: gene Location: 84744-85883 bp Feature: domain Description: eubact_ribD Location: 84810-85860 bp Feature: domain Description: eubact_ribD Location: 84810-85 860 bp Feature: gene Location: 86118-86936 bp Feature: domain Description: KOG0409 Location: 86121-86931 bp Feature: domain Description: KOG0409 Location: 86121-86931 bp Feature: gene Location: 87006-87614 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 87039-87399 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 87039-87399 bp Feature: gene Location: 87614-89218 bp Feature: domain Description: SWIM Location: 88982-89075 bp Feature: domain Description: SWIM Location: 88982-89075 bp Feature: gene Location: 89215-91095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT eubact_ribD (TIGR00326), KOG0409 (KOG0409, Predicted dehydrogenase ), RVT-Retrons, SWIM (pfam04434)

Seq: JAAYAY010000050.1 Planctomycetaceae bacterium isolate AS06rmzACSIP_219 88054_AS06, whole genome shotgun sequence (2125 bp)
Overview 1 RT 1: 95-2123 bp Neighborhood of RT #1 [95, 2123] RVT-GII GIIM Feature: gene Location: 95-1363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311-932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311-932 bp Feature: domain Description: GIIM Note: maturase Location: 974-1202 bp Feature: domain Description: GIIM Note: maturase Location: 974-1202 bp Feature: gene Location: 1477-1749 bp Feature: gene Location: 1842-2123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)