myRT

myRT report for GCA_012719905.1_ASM1271990v1

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Seq: JAAXZM010000063.1 Pseudomonas lactis isolate AS01afH2WH_42 19630_AS01, whole genome shotgun sequence (71664 bp)
Overview 1 RT 1: 25982-29804 bp Neighborhood of RT #1 [25982, 29804] HTH_XRE RVT-Retrons Feature: gene Location: 25982-26314 bp Feature: domain Description: HTH_XRE Location: 26012-26183 bp Feature: domain Description: HTH_XRE Location: 2601 2-261 83 bp Feature: gene Location: 26591-27364 bp Feature: gene Location: 27832-28941 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27967-28528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27967-28528 bp Feature: gene Location: 29017-29334 bp Feature: gene Location: 29361-29804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: JAAXZM010000084.1 Pseudomonas lactis isolate AS01afH2WH_42 27773_AS01, whole genome shotgun sequence (20556 bp)
Overview 1 RT 1: 15950-20554 bp Neighborhood of RT #1 [15950, 20554] RVT-UG15 Feature: gene Location: 15950-16630 bp Feature: gene Location: 16660-16968 bp Feature: gene Location: 17428-19110 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 17878-18283 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 17878-182 83 bp Feature: gene Location: 19555-20130 bp Feature: gene Location: 20399-20554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15

Seq: JAAXZM010000019.1 Pseudomonas lactis isolate AS01afH2WH_42 5136_AS01, whole genome shotgun sequence (103890 bp)
Overview 1 RT 1: 86149-93961 bp Neighborhood of RT #1 [86149, 93966] OmpR LTA_synthase RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 86149-86832 bp Feature: domain Description: OmpR Location: 86152-86815 bp Feature: domain Description: OmpR Location: 86152-86815 bp Feature: gene Location: 87036-88985 bp Feature: domain Description: LTA_synthase Location: 87864-88674 bp Feature: domain Description: LTA_synthase Location: 87864-88674 bp Feature: gene Location: 89254-90945 bp Feature: domain Description: RVT_N Location: 89308-89548 bp Feature: domain Description: RVT_N Location: 893 08-89548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89596-90241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89596-90241 bp Feature: domain Description: GIIM Note: maturase Location: 90292-90526 bp Feature: domain Description: GIIM Note: maturase Location: 90292-90526 bp Feature: domain Description: HNHc Note: nucleases Location: 90745-90898 bp Feature: domain Description: HNHc Note: nucleases Location: 90745-90898 bp Feature: gene Location: 91980-93623 bp Feature: domain Description: groEL Location: 91986-93606 bp Feature: domain Description: groEL Location: 91986-93 606 bp Feature: gene Location: 93673-93966 bp Feature: domain Description: groES Location: 93676-93961 bp Feature: domain Description: groES Location: 93 676-93 961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), LTA_synthase (cd16015), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: JAAXZM010000025.1 Pseudomonas lactis isolate AS01afH2WH_42 9843_AS01, whole genome shotgun sequence (12832 bp)
Overview 1 RT 1: 4396-7811 bp Neighborhood of RT #1 [4396, 7811] DUF4406 RVT-DGRs Avd_like Feature: gene Location: 4396-5085 bp Feature: gene Location: 5082-5414 bp Feature: domain Description: DUF4406 Location: 5115-5382 bp Feature: domain Description: DUF4 4 06 Location: 5115-5382 bp Feature: gene Location: 5437-6594 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5686-6370 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5686-6370 bp Feature: gene Location: 6807-7160 bp Feature: domain Description: Avd_like Location: 6834-7140 bp Feature: domain Description: Avd_like Location: 6834 -714 0 bp Feature: gene Location: 7218-7811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4406 (pfam14359), RVT-DGRs, Avd_like (cd16376)