myRT

myRT report for GCA_012727935.1_ASM1272793v1

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Seq: JAAYGA010000118.1 Pseudomonadaceae bacterium isolate AS09scLD_149 104670_AS09, whole genome shotgun sequence (5968 bp)
Overview 1 RT 1: 533-5909 bp Neighborhood of RT #1 [533, 5965] DUF45 HATPase RVT-Retrons TIR_2 PRK07726 Feature: gene Location: 533-1252 bp Feature: domain Description: DUF45 Location: 614-1229 bp Feature: domain Description: DUF45 Location: 61 4-1 229 bp Feature: gene Location: 1339-2352 bp Feature: domain Description: HATPase Location: 1804-2206 bp Feature: domain Description: HATPase Location: 1 804-2206 bp Feature: gene Location: 2933-4402 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3083-3674 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3083-3674 bp Feature: domain Description: TIR_2 Location: 4004-4349 bp Feature: domain Description: TIR_2 Location: 4004-4349 bp Feature: gene Location: 4637-5965 bp Feature: domain Description: PRK07726 Location: 4640-5909 bp Feature: domain Description: PRK07726 Location: 4640-5909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF45 (pfam01863), HATPase (cl00075), RVT-Retrons, TIR_2 (pfam13676), PRK07726 (DNA topoisomerase 3)

Seq: JAAYGA010000187.1 Pseudomonadaceae bacterium isolate AS09scLD_149 164639_AS09, whole genome shotgun sequence (2783 bp)
Overview 1 RT 1: 223-2719 bp Neighborhood of RT #1 [223, 2781] RVT-UG2 PRK07726 Feature: gene Location: 223-1155 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 424-1150 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 42 4-1150 bp Feature: gene Location: 1180-1506 bp Feature: gene Location: 1618-2781 bp Feature: domain Description: PRK07726 Location: 1624-2719 bp Feature: domain Description: PRK0772 6 Location: 162 4-2 719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, PRK07726 (DNA topoisomerase 3)

Seq: JAAYGA010000342.1 Pseudomonadaceae bacterium isolate AS09scLD_149 331935_AS09, whole genome shotgun sequence (2096 bp)
Overview 1 RT 1: 2-215 bp Neighborhood of RT #1 [2, 2095] RVT-UG1 Feature: gene Location: 2-2095 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 17-215 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 17-215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1

Seq: JAAYGA010000365.1 Pseudomonadaceae bacterium isolate AS09scLD_149 380774_AS09, whole genome shotgun sequence (17861 bp)
Overview 1 RT 1: 4597-10262 bp Neighborhood of RT #1 [4597, 10270] RVT_N RVT-GII GIIM HNHc PRK05347 cysS Feature: gene Location: 4597-4776 bp Feature: gene Location: 4892-5035 bp Feature: gene Location: 5051-7033 bp Feature: domain Description: RVT_N Location: 5315-5558 bp Feature: domain Description: RVT_N Location: 5315-5558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5606-6257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5606-6257 bp Feature: domain Description: GIIM Note: maturase Location: 6332-6563 bp Feature: domain Description: GIIM Note: maturase Location: 6332-6563 bp Feature: domain Description: HNHc Note: nucleases Location: 6782-6947 bp Feature: domain Description: HNHc Note: nucleases Location: 6782-694 7 bp Feature: gene Location: 7162-8847 bp Feature: domain Description: PRK05347 Location: 7186-8827 bp Feature: domain Description: PRK0534 7 Location: 7186-8827 bp Feature: gene Location: 8849-10270 bp Feature: domain Description: cysS Location: 8867-10262 bp Feature: domain Description: cysS Location: 8867-10262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05347 (glutaminyl-tRNA synthetase; Provisional), cysS (TIGR00435)

Seq: JAAYGA010000077.1 Pseudomonadaceae bacterium isolate AS09scLD_149 68356_AS09, whole genome shotgun sequence (2445 bp)
Overview 1 RT 1: 2-2337 bp Neighborhood of RT #1 [2, 2444] RVT-UG1 ALP_N-acyl_transferase Feature: gene Location: 2-868 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8-185 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8-185 bp Feature: gene Location: 861-2444 bp Feature: domain Description: ALP_N-acyl_transferase Location: 2019-2337 bp Feature: domain Description: ALP_N-acyl_transferase Location: 2019-2337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, ALP_N-acyl_transferase (cd07571)