myRT

myRT report for GCA_012728415.1_ASM1272841v1

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Seq: JAAYFD010000045.1 Gammaproteobacteria bacterium isolate AS07pgkLD_43 110599_AS07, whole genome shotgun sequence (157412 bp)
Overview 1 RT 1: 2-4829 bp Neighborhood of RT #1 [2, 4840] RVT-GII HNH LptD PRK10770 Feature: gene Location: 2-589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 -209 bp Feature: domain Description: HNH Note: nucleases Location: 404-542 bp Feature: domain Description: HNH Note: nucleases Location: 404-542 bp Feature: gene Location: 775-3558 bp Feature: domain Description: LptD Location: 1153-3541 bp Feature: domain Description: LptD Location: 1 1 53-3541 bp Feature: gene Location: 3548-4840 bp Feature: domain Description: PRK10770 Location: 3611-4829 bp Feature: domain Description: PRK1 0770 Location: 361 1 -4829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNH (pfam01844)

Seq: JAAYFD010000020.1 Gammaproteobacteria bacterium isolate AS07pgkLD_43 45782_AS07, whole genome shotgun sequence (30988 bp)
Overview 1 RT 1: 25162-30489 bp Neighborhood of RT #1 [25162, 30521] DUF1566 Avd_like RVT-DGRs DUF1566 IPTL-CTERM IS5 IS5 Feature: gene Location: 25162-26103 bp Feature: domain Description: DUF1566 Location: 25657-26092 bp Feature: domain Description: DUF1566 Location: 2 5657-2 6092 bp Feature: gene Location: 26136-26543 bp Feature: domain Description: Avd_like Location: 26181-26496 bp Feature: domain Description: Avd_like Location: 2 6181-2 6496 bp Feature: gene Location: 26748-28310 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27009-27726 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 7009-2 772 6 bp Feature: gene Location: 28338-29519 bp Feature: domain Description: DUF1566 Location: 28464-28836 bp Feature: domain Description: DUF1566 Location: 2 8464-2 8836 bp Feature: domain Description: IPTL-CTERM Location: 29427-29505 bp Feature: domain Description: IPTL-CTERM Location: 2 942 7-2 9505 bp Feature: gene Location: 29670-30521 bp Feature: domain Description: IS5 Location: 29859-29985 bp Feature: domain Description: IS5 Location: 2 9859-2 9985 bp Feature: domain Description: IS5 Location: 30021-30489 bp Feature: domain Description: IS5 Location: 3002 1-30489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, IPTL-CTERM (pfam18203), IS5 (COG3039)

Seq: JAAYFD010000004.1 Gammaproteobacteria bacterium isolate AS07pgkLD_43 6118_AS07, whole genome shotgun sequence (4739 bp)
Overview 1 RT 1: 165-4682 bp Neighborhood of RT #1 [165, 4738] rlmL PRK05286 RVT-GII GIIM HNH Feature: gene Location: 165-2354 bp Feature: domain Description: rlmL Location: 189-2343 bp Feature: domain Description: rlmL Location: 189-23 43 bp Feature: gene Location: 2469-3533 bp Feature: domain Description: PRK05286 Location: 2472-3483 bp Feature: domain Description: PRK05286 Location: 2472-3 483 bp Feature: gene Location: 3662-4738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671-3986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 671-3 986 bp Feature: domain Description: GIIM Note: maturase Location: 4058-4292 bp Feature: domain Description: GIIM Note: maturase Location: 4058-4292 bp Feature: domain Description: HNH Note: nucleases Location: 4544-4682 bp Feature: domain Description: HNH Note: nucleases Location: 4544-4682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rlmL (PRK11783), PRK05286 (quinone-dependent dihydroorotate dehydrogenase), RVT-GII, GIIM (pfam08388), HNH (pfam01844)