myRT

myRT report for GCA_012839505.1_ASM1283950v1

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Seq: DUNE01000022.1 TPA_asm: Methanosarcina sp. isolate AS05jafATM_20 4774_AS05, whole genome shotgun sequence (35075 bp)
Overview 1 RT 1: 27179-34423 bp Neighborhood of RT #1 [27179, 34602] COG4744 CobN cobN CobN RVT-GII RVT-GII GIIM Feature: gene Location: 27179-27571 bp Feature: domain Description: COG4744 Location: 27182-27539 bp Feature: domain Description: COG4744 Location: 271 82-27539 bp Feature: gene Location: 27719-33076 bp Feature: domain Description: CobN Location: 27797-28241 bp Feature: domain Description: CobN Location: 27797-28241 bp Feature: domain Description: cobN Location: 28574-28805 bp Feature: domain Description: cobN Location: 28574-28805 bp Feature: domain Description: CobN Location: 28814-33068 bp Feature: domain Description: CobN Location: 2881 4-33068 bp Feature: gene Location: 33539-33697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33542-33689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33542-33689 bp Feature: gene Location: 33778-34602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33784-34138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33784-341 38 bp Feature: domain Description: GIIM Note: maturase Location: 34189-34423 bp Feature: domain Description: GIIM Note: maturase Location: 341 89-34423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4744 (Uncharacterized protein ), CobN (COG1429), cobN (PRK12321), RVT-GII, GIIM (pfam08388)

Seq: DUNE01000270.1 TPA_asm: Methanosarcina sp. isolate AS05jafATM_20 52857_AS05, whole genome shotgun sequence (14939 bp)
Overview 1 RT 1: 9065-14183 bp Neighborhood of RT #1 [9065, 14275] GT4_PimA-like COG4906 RVT-GII GIIM RVT_N Feature: gene Location: 9065-10159 bp Feature: domain Description: GT4_PimA-like Location: 9098-10127 bp Feature: domain Description: GT4_PimA-like Location: 9098-1012 7 bp Feature: gene Location: 10146-12308 bp Feature: domain Description: COG4906 Location: 10188-12300 bp Feature: domain Description: COG4906 Location: 10188-12 300 bp Feature: gene Location: 12778-13857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12781-13369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 781-13369 bp Feature: domain Description: GIIM Note: maturase Location: 13420-13654 bp Feature: domain Description: GIIM Note: maturase Location: 1342 0-13654 bp Feature: gene Location: 13850-14275 bp Feature: domain Description: RVT_N Location: 13940-14183 bp Feature: domain Description: RVT_N Location: 13940-14183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT4_PimA-like (cd03801), COG4906 (Uncharacterized membrane protein ), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: DUNE01000305.1 TPA_asm: Methanosarcina sp. isolate AS05jafATM_20 61365_AS05, whole genome shotgun sequence (31712 bp)
Overview 1 RT 1: 7494-9671 bp Neighborhood of RT #1 [7494, 9679] PRiA4_ORF3 RVT-CRISPR Cas6b_N Cas6b_C Feature: gene Location: 7494-8060 bp Feature: domain Description: PRiA4_ORF3 Location: 7515-8046 bp Feature: domain Description: PRiA4_ORF3 Location: 7515-8046 bp Feature: gene Location: 8141-8284 bp Feature: gene Location: 8312-8509 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8321-8504 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 83 21-8504 bp Feature: gene Location: 8633-8824 bp Feature: gene Location: 9005-9679 bp Feature: domain Description: Cas6b_N Location: 9026-9326 bp Feature: domain Description: Cas6b_N Location: 9026-93 26 bp Feature: domain Description: Cas6b_C Location: 9338-9671 bp Feature: domain Description: Cas6b_C Location: 93 3 8-9671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRiA4_ORF3 (pfam07929), RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C