myRT

myRT report for GCA_012839985.1_ASM1283998v1

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Seq: DUMH01000110.1 TPA_asm: Petrimonas sp. isolate AS04akNAM_45 13827_AS04, whole genome shotgun sequence (1637 bp)
Overview 1 RT 1: 111-1585 bp Neighborhood of RT #1 [111, 1635] RVT-GII PutP Feature: gene Location: 111-404 bp Feature: gene Location: 539-778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545-674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545-674 bp Feature: gene Location: 681-959 bp Feature: gene Location: 1060-1635 bp Feature: domain Description: PutP Location: 1072-1585 bp Feature: domain Description: PutP Location: 1 072-1 585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PutP (COG0591)

Seq: DUMH01000139.1 TPA_asm: Petrimonas sp. isolate AS04akNAM_45 25700_AS04, whole genome shotgun sequence (32478 bp)
Overview 1 RT 1: 8922-16998 bp Neighborhood of RT #1 [8922, 17168] HTH_17 RVT-GII GIIM RVT-GII GIIM DUF5125 SusF_SusE Glyco_hydro_42 Glyco_hydro_42M Feature: gene Location: 8922-9230 bp Feature: domain Description: HTH_17 Location: 9045-9186 bp Feature: domain Description: HTH_17 Location: 9045-9186 bp Feature: gene Location: 9338-9562 bp Feature: gene Location: 9914-11140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10085-10739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10085-10739 bp Feature: domain Description: GIIM Note: maturase Location: 10826-11036 bp Feature: domain Description: GIIM Note: maturase Location: 1082 6-11036 bp Feature: gene Location: 11238-11441 bp Feature: gene Location: 11555-11725 bp Feature: gene Location: 11739-13268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12216-12834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 16-12 834 bp Feature: domain Description: GIIM Note: maturase Location: 12879-13077 bp Feature: domain Description: GIIM Note: maturase Location: 12 879-13077 bp Feature: gene Location: 13647-15056 bp Feature: domain Description: DUF5125 Location: 14085-14646 bp Feature: domain Description: DUF512 5 Location: 14085-14646 bp Feature: domain Description: SusF_SusE Location: 14733-14901 bp Feature: domain Description: SusF_SusE Location: 14733-14901 bp Feature: gene Location: 15075-17168 bp Feature: domain Description: Glyco_hydro_42 Location: 15192-16329 bp Feature: domain Description: Glyco_hydro_42 Location: 15192 -1632 9 bp Feature: domain Description: Glyco_hydro_42M Location: 16389-16998 bp Feature: domain Description: Glyco_hydro_42 M Location: 16389-16998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII, GIIM (pfam08388), DUF5125 (pfam17163), SusF_SusE (pfam16411), Glyco_hydro_42 (pfam02449), Glyco_hydro_42M (pfam08532)

Seq: DUMH01000016.1 TPA_asm: Petrimonas sp. isolate AS04akNAM_45 45215_AS04, whole genome shotgun sequence (8661 bp)
Overview 1 RT 1: 113-4886 bp Neighborhood of RT #1 [113, 5590] RVT-Retrons NERD Peptidases_S8_Subtilisin_like_2 Feature: gene Location: 113-826 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 143-656 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 143 -656 bp Feature: gene Location: 831-1994 bp Feature: domain Description: NERD Location: 930-1098 bp Feature: domain Description: NERD Location: 93 0-1098 bp Feature: gene Location: 3131-5590 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 3947-4886 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 3 947-4886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, NERD (pfam08378), Peptidases_S8_Subtilisin_like_2 (cd04847)

Seq: DUMH01000039.1 TPA_asm: Petrimonas sp. isolate AS04akNAM_45 46592_AS04, whole genome shotgun sequence (6141 bp)
Overview 1 RT 1: 2652-6099 bp Neighborhood of RT #1 [2652, 6140] Relaxase YWFCY PRK13257 RVT-GII Feature: gene Location: 2652-3959 bp Feature: domain Description: Relaxase Location: 2784-3120 bp Feature: domain Description: Relaxase Location: 2784 -3120 bp Feature: gene Location: 4088-4813 bp Feature: domain Description: YWFCY Location: 4094-4271 bp Feature: domain Description: YWFCY Location: 4 094 -4 271 bp Feature: domain Description: PRK13257 Location: 4532-4661 bp Feature: domain Description: PRK13257 Location: 4 532-4 661 bp Feature: gene Location: 5283-6140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5646-6099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 564 6-6099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), PRK13257 (allantoicase; Provisional), RVT-GII

Seq: DUMH01000249.1 TPA_asm: Petrimonas sp. isolate AS04akNAM_45 51502_AS04, whole genome shotgun sequence (13619 bp)
Overview 1 RT 1: 1515-5191 bp Neighborhood of RT #1 [1515, 5244] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 1515-2519 bp Feature: domain Description: INT_RitB_C_like Location: 1842-2448 bp Feature: domain Description: INT_RitB_C_like Location: 1842-2448 bp Feature: gene Location: 2503-3516 bp Feature: domain Description: Phage_int_SAM_1 Location: 2548-2803 bp Feature: domain Description: Phage_int_SAM_1 Location: 25 48-2803 bp Feature: domain Description: INT_RitC_C_like Location: 2884-3436 bp Feature: domain Description: INT_RitC_C_like Location: 2884-3436 bp Feature: gene Location: 3641-4597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3644-3911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3644-3911 bp Feature: domain Description: GIIM Note: maturase Location: 3965-4199 bp Feature: domain Description: GIIM Note: maturase Location: 3965 -4199 bp Feature: gene Location: 4594-4884 bp Feature: domain Description: DUF4134 Location: 4717-4879 bp Feature: domain Description: DUF4134 Location: 4717-4879 bp Feature: gene Location: 4909-5244 bp Feature: domain Description: DUF4133 Location: 4924-5191 bp Feature: domain Description: DUF4133 Location: 4924-5 191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII, GIIM (pfam08388), DUF4134 (pfam13572), DUF4133 (pfam13571)