myRT

myRT report for GCA_012842145.1_ASM1284214v1

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Seq: DUTJ01000247.1 TPA_asm: Clostridiaceae bacterium isolate AS05jafATM_59 23823_AS05, whole genome shotgun sequence (6275 bp)
Overview 1 RT 1: 3118-5505 bp Neighborhood of RT #1 [3118, 5505] COG5340 RVT-GII DUF5372 Feature: gene Location: 3118-3711 bp Feature: domain Description: COG5340 Location: 3133-3565 bp Feature: domain Description: COG5340 Location: 31 33-3565 bp Feature: gene Location: 3713-3955 bp Feature: gene Location: 4569-4904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4773-4824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4773-4824 bp Feature: gene Location: 4783-5145 bp Feature: domain Description: DUF5372 Location: 4867-5089 bp Feature: domain Description: DUF5372 Location: 4867-5089 bp Feature: gene Location: 5155-5505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-GII, DUF5372 (pfam17342)

Seq: DUTJ01000037.1 TPA_asm: Clostridiaceae bacterium isolate AS05jafATM_59 3122_AS05, whole genome shotgun sequence (3759 bp)
Overview 1 RT 1: 114-3468 bp Neighborhood of RT #1 [114, 3644] sensory_box sensory_box RVT-GII GIIM HTH_XRE Feature: gene Location: 114-962 bp Feature: domain Description: sensory_box Location: 123-438 bp Feature: domain Description: sensory_box Location: 12 3-438 bp Feature: domain Description: sensory_box Location: 459-792 bp Feature: domain Description: sensory_box Location: 459-792 bp Feature: gene Location: 1110-2522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1488-2172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1488-2 172 bp Feature: domain Description: GIIM Note: maturase Location: 2241-2472 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 41-2 472 bp Feature: gene Location: 3288-3644 bp Feature: domain Description: HTH_XRE Location: 3297-3468 bp Feature: domain Description: HTH_XRE Location: 32 97-3468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sensory_box (TIGR00229), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: DUTJ01000072.1 TPA_asm: Clostridiaceae bacterium isolate AS05jafATM_59 6477_AS05, whole genome shotgun sequence (2855 bp)
Overview 1 RT 1: 162-2737 bp Neighborhood of RT #1 [162, 2745] RVT-GII GIIM RVT-GII COG3415 Recombinase Feature: gene Location: 162-818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165-354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165-3 54 bp Feature: domain Description: GIIM Note: maturase Location: 429-657 bp Feature: domain Description: GIIM Note: maturase Location: 429-657 bp Feature: gene Location: 852-1217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873-1212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873 -1212 bp Feature: gene Location: 1246-2268 bp Feature: domain Description: COG3415 Location: 2065-2236 bp Feature: domain Description: COG3 415 Location: 2065-223 6 bp Feature: gene Location: 2368-2745 bp Feature: domain Description: Recombinase Location: 2395-2737 bp Feature: domain Description: Recombinase Location: 23 95-273 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3415 (Transposase ), Recombinase (pfam07508)

Seq: DUTJ01000770.1 TPA_asm: Clostridiaceae bacterium isolate AS05jafATM_59 76852_AS05, whole genome shotgun sequence (3787 bp)
Overview 1 RT 1: 31-1138 bp Neighborhood of RT #1 [31, 1138] RVT-GII HicB HicB Feature: gene Location: 31-435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-391 bp Feature: gene Location: 482-880 bp Feature: domain Description: HicB Location: 509-716 bp Feature: domain Description: HicB Location: 509-716 bp Feature: domain Description: HicB Location: 716-821 bp Feature: domain Description: HicB Location: 716-821 bp Feature: gene Location: 893-1138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HicB (pfam05534)