myRT

myRT report for GCA_012843965.1_ASM1284396v1

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Seq: JABAGD010000011.1 Clostridium beijerinckii strain WB01_NA02 Contig_11, whole genome shotgun sequence (114791 bp)
Overview 1 RT 1: 3-10829 bp 2 RT 2: 55911-63263 bp Neighborhood of RT #1 [3, 10829] PLDc_N_DEXD_b1 SSL2 DUF3427 RVT-GII Neighborhood of RT #2 [55911, 63268] sigma70-ECF YvrJ RVT-GII HNHc DUF2922 COG5263 Feature: gene Location: 3-143 bp Feature: gene Location: 424-3588 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 847-1273 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 847-1 273 bp Feature: domain Description: SSL2 Location: 1327-2458 bp Feature: domain Description: SSL2 Location: 1 327-2458 bp Feature: domain Description: DUF3427 Location: 2797-3562 bp Feature: domain Description: DUF3427 Location: 2797-3562 bp Feature: gene Location: 3682-5148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3976-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3976-4687 bp Feature: gene Location: 5666-10093 bp Feature: gene Location: 10086-10829 bp Feature: gene Location: 55911-56501 bp Feature: domain Description: sigma70-ECF Location: 55974-56472 bp Feature: domain Description: sigma70-ECF Location: 55974-56472 bp Feature: gene Location: 56491-56694 bp Feature: domain Description: YvrJ Location: 56518-56620 bp Feature: domain Description: YvrJ Location: 5651 8-56620 bp Feature: gene Location: 58069-59883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58387-59086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58387-59086 bp Feature: domain Description: HNHc Note: nucleases Location: 59644-59761 bp Feature: domain Description: HNHc Note: nucleases Location: 59644-59761 bp Feature: gene Location: 60240-60461 bp Feature: domain Description: DUF2922 Location: 60255-60447 bp Feature: domain Description: DUF2922 Location: 60255-60447 bp Feature: gene Location: 60842-63268 bp Feature: domain Description: COG5263 Location: 62966-63263 bp Feature: domain Description: COG5263 Location: 62966-63263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N_DEXD_b1 (cd09203), SSL2 (COG1061), DUF3427 (pfam11907), RVT-GII, sigma70-ECF (TIGR02937), YvrJ (pfam12841), HNHc (smart00507), DUF2922 (pfam11148), COG5263 (Glucan-binding domain (YG repeat) )

Seq: JABAGD010000017.1 Clostridium beijerinckii strain WB01_NA02 Contig_17, whole genome shotgun sequence (104128 bp)
Overview 1 RT 1: 53823-59312 bp Neighborhood of RT #1 [53823, 59464] AbrB RVT-GII HNHc PRK06921 Phage_rep_org_N DnaD_dom Feature: gene Location: 53823-53999 bp Feature: gene Location: 54262-54504 bp Feature: domain Description: AbrB Location: 54265-54442 bp Feature: domain Description: AbrB Location: 542 65-54442 bp Feature: gene Location: 54907-56721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55225-55924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552 2 5-5592 4 bp Feature: domain Description: HNHc Note: nucleases Location: 56500-56599 bp Feature: domain Description: HNHc Note: nucleases Location: 56500-56599 bp Feature: gene Location: 57412-58170 bp Feature: domain Description: PRK06921 Location: 57436-58141 bp Feature: domain Description: PRK0692 1 Location: 57436-58141 bp Feature: gene Location: 58061-59464 bp Feature: domain Description: Phage_rep_org_N Location: 58127-58487 bp Feature: domain Description: Phage_rep_org_N Location: 5812 7-58487 bp Feature: domain Description: DnaD_dom Location: 59216-59312 bp Feature: domain Description: DnaD_dom Location: 592 16-59312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbrB (pfam05145), RVT-GII, HNHc (smart00507), PRK06921 (hypothetical protein; Provisional), Phage_rep_org_N (pfam09681), DnaD_dom (TIGR01446)

Seq: JABAGD010000038.1 Clostridium beijerinckii strain WB01_NA02 Contig_38, whole genome shotgun sequence (54385 bp)
Overview 1 RT 1: 39442-43503 bp Neighborhood of RT #1 [39442, 43646] HNHc RVT-GII YvrJ HipB Feature: gene Location: 39442-39579 bp Feature: gene Location: 40182-40619 bp Feature: domain Description: HNHc Note: nucleases Location: 40329-40491 bp Feature: domain Description: HNHc Note: nucleases Location: 403 29-40491 bp Feature: gene Location: 40643-42055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41000-41696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41000-41696 bp Feature: gene Location: 42693-42968 bp Feature: domain Description: YvrJ Location: 42822-42897 bp Feature: domain Description: YvrJ Location: 42822-42897 bp Feature: gene Location: 43170-43646 bp Feature: domain Description: HipB Location: 43242-43503 bp Feature: domain Description: HipB Location: 43 242-43 503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, YvrJ (pfam12841), HipB (COG1396)

Seq: JABAGD010000049.1 Clostridium beijerinckii strain WB01_NA02 Contig_49, whole genome shotgun sequence (38673 bp)
Overview 1 RT 1: 6865-12978 bp Neighborhood of RT #1 [6865, 12983] zf-HC2 sigma70-ECF RVT-GII PRK06921 Feature: gene Location: 6865-7800 bp Feature: domain Description: zf-HC2 Location: 6874-6976 bp Feature: domain Description: zf-HC2 Location: 6874 -6976 bp Feature: gene Location: 8020-8442 bp Feature: domain Description: sigma70-ECF Location: 8032-8434 bp Feature: domain Description: sigma70-ECF Location: 8032-84 34 bp Feature: gene Location: 10025-10939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10280-10904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10280-10904 bp Feature: gene Location: 11540-12154 bp Feature: gene Location: 12201-12983 bp Feature: domain Description: PRK06921 Location: 12225-12978 bp Feature: domain Description: PRK06921 Location: 12225-12978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-HC2 (pfam13490), sigma70-ECF (TIGR02937), RVT-GII, PRK06921 (hypothetical protein; Provisional)

Seq: JABAGD010000058.1 Clostridium beijerinckii strain WB01_NA02 Contig_58, whole genome shotgun sequence (33738 bp)
Overview 1 RT 1: 28085-33267 bp Neighborhood of RT #1 [28085, 33407] RVT-GII PRK12335 YdiL Feature: gene Location: 28085-29245 bp Feature: gene Location: 29392-29529 bp Feature: gene Location: 29990-30991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30332-30953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30332-3095 3 bp Feature: gene Location: 31784-32383 bp Feature: domain Description: PRK12335 Location: 31880-32102 bp Feature: domain Description: PRK12335 Location: 31880-32102 bp Feature: gene Location: 32601-33407 bp Feature: domain Description: YdiL Location: 32649-33267 bp Feature: domain Description: YdiL Location: 32649-33267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK12335 (tellurite resistance protein TehB; Provisional), YdiL (COG1266)