myRT

myRT report for GCA_012911975.1_ASM1291197v1

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Seq: SMDQ01000025.1 Nodosilinea sp. P-1105 NODE_25, whole genome shotgun sequence (72114 bp)
Overview 1 RT 1: 66681-72002 bp Neighborhood of RT #1 [66681, 72112] HTH_XRE AAA_22 RVT-CRISPR Cas1_I-II-III 23S_rRNA_IVP Cas2_I_II_III Feature: gene Location: 66681-67454 bp Feature: gene Location: 67564-68997 bp Feature: domain Description: HTH_XRE Location: 67639-67771 bp Feature: domain Description: HTH_XRE Location: 67639-67771 bp Feature: domain Description: AAA_22 Location: 67903-68191 bp Feature: domain Description: AAA_22 Location: 67903-681 91 bp Feature: gene Location: 69272-71239 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 69461-70070 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 69461 -70070 bp Feature: domain Description: Cas1_I-II-III Location: 70244-71201 bp Feature: domain Description: Cas1 _I-II-III Location: 70244-71 201 bp Feature: gene Location: 71280-71675 bp Feature: domain Description: 23S_rRNA_IVP Location: 71313-71625 bp Feature: domain Description: 23S_rRNA_IVP Location: 71 31 3-71 625 bp Feature: gene Location: 71765-72112 bp Feature: domain Description: Cas2_I_II_III Location: 71774-72002 bp Feature: domain Description: Cas2_I_II_III Location: 71 774-72002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), AAA_22 (pfam13401), RVT-CRISPR, Cas1_I-II-III (cl00656), 23S_rRNA_IVP (pfam05635), Cas2_I_II_III (cl11442)

Seq: SMDQ01000034.1 Nodosilinea sp. P-1105 NODE_34, whole genome shotgun sequence (57752 bp)
Overview 1 RT 1: 14676-20547 bp Neighborhood of RT #1 [14676, 20561] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 14676-15101 bp Feature: gene Location: 15200-16078 bp Feature: domain Description: YfmG Location: 15305-16064 bp Feature: domain Description: YfmG Location: 15305-16064 bp Feature: gene Location: 16386-17471 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16599-17238 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16599-172 38 bp Feature: gene Location: 17474-17830 bp Feature: domain Description: Avd_like Location: 17495-17801 bp Feature: domain Description: Avd_like Location: 17495-17801 bp Feature: gene Location: 17904-20561 bp Feature: domain Description: YfmG Location: 19719-20547 bp Feature: domain Description: YfmG Location: 19719-2 0547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: SMDQ01000038.1 Nodosilinea sp. P-1105 NODE_38, whole genome shotgun sequence (53979 bp)
Overview 1 RT 1: 41180-44699 bp Neighborhood of RT #1 [41180, 44699] RVT-DGRs IS285 Transposase_mut Feature: gene Location: 41180-41395 bp Feature: gene Location: 41529-41948 bp Feature: gene Location: 42057-42374 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42063-42255 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42063 -42255 bp Feature: gene Location: 42498-43286 bp Feature: domain Description: IS285 Location: 42528-43131 bp Feature: domain Description: IS285 Location: 42528-43 13 1 bp Feature: domain Description: Transposase_mut Location: 43134-43215 bp Feature: domain Description: Transposase_mut Location: 43 13 4-43 215 bp Feature: gene Location: 43455-44699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, IS285 (COG3328), Transposase_mut (pfam00872)

Seq: SMDQ01000056.1 Nodosilinea sp. P-1105 NODE_56, whole genome shotgun sequence (39150 bp)
Overview 1 RT 1: 2540-7665 bp Neighborhood of RT #1 [2540, 7781] group_II_RT_mat RVT-GII AIPR Feature: gene Location: 2540-3517 bp Feature: gene Location: 3823-4311 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3829-4153 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3829-4 153 bp Feature: gene Location: 4308-5138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4587-5112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 587-5112 bp Feature: gene Location: 5939-6085 bp Feature: gene Location: 6117-7781 bp Feature: domain Description: AIPR Location: 6834-7665 bp Feature: domain Description: AIPR Location: 6834 -7665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, AIPR (pfam10592)