myRT

myRT report for GCA_012912005.1_ASM1291200v1

Download annotations/find similar RTs

Seq: JABBEA010000016.1 Paenibacillus sp. SZ31 contig_16, whole genome shotgun sequence (141543 bp)
Overview 1 RT 1: 43667-51996 bp Neighborhood of RT #1 [43667, 52010] DUF4317 RVT-UG12 YbjD YbjD UvrD Feature: gene Location: 43667-44221 bp Feature: gene Location: 44553-45725 bp Feature: domain Description: DUF4317 Location: 44556-45702 bp Feature: domain Description: DUF431 7 Location: 44556-45702 bp Feature: gene Location: 46676-48226 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 47138-47411 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 471 38-4741 1 bp Feature: gene Location: 48239-50158 bp Feature: domain Description: YbjD Location: 48242-49301 bp Feature: domain Description: YbjD Location: 48242-49301 bp Feature: domain Description: YbjD Location: 49532-49958 bp Feature: domain Description: YbjD Location: 49532-49958 bp Feature: gene Location: 50148-52010 bp Feature: domain Description: UvrD Location: 50169-51996 bp Feature: domain Description: UvrD Location: 501 69-51 996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4317 (pfam14199), RVT-UG12, YbjD (COG3593), UvrD (COG0210)

Seq: JABBEA010000018.1 Paenibacillus sp. SZ31 contig_18, whole genome shotgun sequence (134594 bp)
Overview 1 RT 1: 8283-13304 bp 2 RT 2: 57575-62841 bp Neighborhood of RT #1 [8283, 13306] Antibiotic_NAT RVT-GII GIIM PRK02929 Neighborhood of RT #2 [57575, 62841] PL-6 Beta_helix RVT-Retrons Feature: gene Location: 8283-8924 bp Feature: gene Location: 9026-9796 bp Feature: domain Description: Antibiotic_NAT Location: 9095-9740 bp Feature: domain Description: Antibiotic_NAT Location: 9095-9740 bp Feature: gene Location: 9980-11272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10280-10913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 80-10913 bp Feature: domain Description: GIIM Note: maturase Location: 11036-11213 bp Feature: domain Description: GIIM Note: maturase Location: 11036-112 13 bp Feature: gene Location: 11637-11786 bp Feature: gene Location: 11888-13306 bp Feature: domain Description: PRK02929 Location: 11900-13304 bp Feature: domain Description: PRK02 92 9 Location: 11900-13304 bp Feature: gene Location: 57575-58120 bp Feature: domain Description: PL-6 Location: 57647-57824 bp Feature: domain Description: PL-6 Location: 57647-5782 4 bp Feature: gene Location: 58257-59600 bp Feature: domain Description: Beta_helix Location: 58290-58734 bp Feature: domain Description: Beta_helix Location: 582 90-58734 bp Feature: gene Location: 60209-61231 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60410-60980 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60410-60980 bp Feature: gene Location: 61425-61673 bp Feature: gene Location: 61747-62841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antibiotic_NAT (pfam02522), RVT-GII, GIIM (pfam08388), PRK02929 (L-arabinose isomerase; Provisional), PL-6 (cl19188), Beta_helix (pfam13229), RVT-Retrons

Seq: JABBEA010000009.1 Paenibacillus sp. SZ31 contig_9, whole genome shotgun sequence (240664 bp)
Overview 1 RT 1: 64257-71930 bp Neighborhood of RT #1 [64257, 71930] HK_WalK HK_WalK OmpR RVT-UG1 nitrilase PRK10572 Feature: gene Location: 64257-65705 bp Feature: domain Description: HK_WalK Location: 64329-64992 bp Feature: domain Description: HK_WalK Location: 643 29-64992 bp Feature: domain Description: HK_WalK Location: 65007-65700 bp Feature: domain Description: HK_WalK Location: 65007-65700 bp Feature: gene Location: 65726-66427 bp Feature: domain Description: OmpR Location: 65747-66419 bp Feature: domain Description: OmpR Location: 65747-66419 bp Feature: gene Location: 66660-70577 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 67320-67824 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 673 20-67824 bp Feature: domain Description: nitrilase Location: 69897-70512 bp Feature: domain Description: nitrilase Location: 69897-70512 bp Feature: gene Location: 70774-71604 bp Feature: domain Description: PRK10572 Location: 70852-71572 bp Feature: domain Description: PRK10572 Location: 70852-71572 bp Feature: gene Location: 71622-71930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HK_WalK (NF033092), OmpR (COG0745), RVT-UG1, nitrilase (cl11424), PRK10572 (arabinose operon transcriptional regulator AraC)