myRT

myRT report for GCA_012912125.1_ASM1291212v1

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Seq: QMEC01000001.1 Brasilonema octagenarum UFV-OR1 NODE_113_116416_cov_1.311986, whole genome shotgun sequence (116416 bp)
Overview 1 RT 1: 86361-92042 bp Neighborhood of RT #1 [86361, 92269] PLN02572 GT4-like RVT-GII GAF GAF PAS PAS_4 AcyC Feature: gene Location: 86361-87521 bp Feature: domain Description: PLN02572 Location: 86367-87516 bp Feature: domain Description: PLN02572 Location: 86367-8751 6 bp Feature: gene Location: 87873-89006 bp Feature: domain Description: GT4-like Location: 87879-88971 bp Feature: domain Description: GT4-like Location: 87879-88971 bp Feature: gene Location: 89021-89215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89060-89192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89060-891 92 bp Feature: gene Location: 89449-89688 bp Feature: gene Location: 89696-92269 bp Feature: domain Description: GAF Location: 89897-90332 bp Feature: domain Description: GAF Location: 89897-90332 bp Feature: domain Description: GAF Location: 90404-90848 bp Feature: domain Description: GAF Location: 90404-90848 bp Feature: domain Description: PAS Location: 90890-90995 bp Feature: domain Description: PAS Location: 90890-90995 bp Feature: domain Description: PAS_4 Location: 91295-91391 bp Feature: domain Description: PAS_4 Location: 91 295-91 391 bp Feature: domain Description: AcyC Location: 91397-92042 bp Feature: domain Description: AcyC Location: 91 397-92042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02572 (UDP-sulfoquinovose synthase), GT4-like (cd05844), RVT-GII, GAF (smart00065), PAS (smart00091), PAS_4 (pfam08448), AcyC (COG2114)

Seq: QMEC01000213.1 Brasilonema octagenarum UFV-OR1 NODE_1915_8763_cov_0.807533, whole genome shotgun sequence (8763 bp)
Overview 1 RT 1: 520-3238 bp Neighborhood of RT #1 [520, 3282] RVT_N RVT-GII GIIM McrA HTH_23 Feature: gene Location: 520-858 bp Feature: gene Location: 900-2471 bp Feature: domain Description: RVT_N Location: 936-1182 bp Feature: domain Description: RVT_N Location: 936-1182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1233-1887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 33-1887 bp Feature: domain Description: GIIM Note: maturase Location: 1944-2142 bp Feature: domain Description: GIIM Note: maturase Location: 1944-2 142 bp Feature: domain Description: McrA Location: 2175-2454 bp Feature: domain Description: McrA Location: 2 175-2 454 bp Feature: gene Location: 2653-2901 bp Feature: gene Location: 2977-3282 bp Feature: domain Description: HTH_23 Location: 3106-3238 bp Feature: domain Description: HTH_2 3 Location: 3106-32 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), HTH_23 (pfam13384)

Seq: QMEC01000013.1 Brasilonema octagenarum UFV-OR1 NODE_201_81694_cov_1.703169, whole genome shotgun sequence (81694 bp)
Overview 1 RT 1: 44248-46087 bp Neighborhood of RT #1 [44248, 46087] DDE_3 GIIM McrA RVT-GII RVT-GII Feature: gene Location: 44248-44469 bp Feature: domain Description: DDE_3 Location: 44257-44422 bp Feature: domain Description: DDE_3 Location: 44257-44422 bp Feature: gene Location: 44742-45263 bp Feature: domain Description: GIIM Note: maturase Location: 44757-44955 bp Feature: domain Description: GIIM Note: maturase Location: 44757-44955 bp Feature: domain Description: McrA Location: 45006-45234 bp Feature: domain Description: McrA Location: 45006-4523 4 bp Feature: gene Location: 45264-45530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45270-45324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45270-453 24 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45324-45489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453 24-45489 bp Feature: gene Location: 45711-45860 bp Feature: gene Location: 45875-46087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), GIIM (pfam08388), McrA (COG4058), RVT-GII

Seq: QMEC01000016.1 Brasilonema octagenarum UFV-OR1 NODE_227_74685_cov_1.233646, whole genome shotgun sequence (74685 bp)
Overview 1 RT 1: 70091-73352 bp Neighborhood of RT #1 [70091, 73366] PRK13697 DOMON_murB_like RVT_N RVT-GII McrA DOMON_murB_like Feature: gene Location: 70091-70450 bp Feature: domain Description: PRK13697 Location: 70118-70448 bp Feature: domain Description: PRK13697 Location: 70118-704 4 8 bp Feature: gene Location: 70576-70809 bp Feature: domain Description: DOMON_murB_like Location: 70588-70798 bp Feature: domain Description: DOMON_murB_like Location: 70588-70798 bp Feature: gene Location: 70985-72502 bp Feature: domain Description: RVT_N Location: 71021-71267 bp Feature: domain Description: RVT_N Location: 71021-71267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71318-71912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71318-71912 bp Feature: domain Description: McrA Location: 72146-72467 bp Feature: domain Description: McrA Location: 7214 6-724 67 bp Feature: gene Location: 72761-72916 bp Feature: gene Location: 73004-73366 bp Feature: domain Description: DOMON_murB_like Location: 73184-73352 bp Feature: domain Description: DOMON_murB_like Location: 73184 -73352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13697 (cytochrome c6; Provisional), DOMON_murB_like (cd09627), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: QMEC01000020.1 Brasilonema octagenarum UFV-OR1 NODE_261_68341_cov_1.276557, whole genome shotgun sequence (68341 bp)
Overview 1 RT 1: 48857-53102 bp Neighborhood of RT #1 [48857, 53128] InsQ RVT_N RVT-GII McrA InsQ KOG1205 Feature: gene Location: 48857-49555 bp Feature: domain Description: InsQ Location: 48863-49532 bp Feature: domain Description: InsQ Location: 48863-495 32 bp Feature: gene Location: 49654-49788 bp Feature: gene Location: 50081-51652 bp Feature: domain Description: RVT_N Location: 50117-50357 bp Feature: domain Description: RVT_N Location: 5 0117-5 035 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50414-51068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 0414-5 1068 bp Feature: domain Description: McrA Location: 51299-51632 bp Feature: domain Description: McrA Location: 5 1299-5 1632 bp Feature: gene Location: 51842-52240 bp Feature: domain Description: InsQ Location: 51848-52169 bp Feature: domain Description: InsQ Location: 5 1848-5 2169 bp Feature: gene Location: 52310-53128 bp Feature: domain Description: KOG1205 Location: 52322-53102 bp Feature: domain Description: KOG1205 Location: 5 2322-5 3102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT_N (pfam13655), RVT-GII, McrA (COG4058), KOG1205 (KOG1205, Predicted dehydrogenase )

Seq: QMEC01000262.1 Brasilonema octagenarum UFV-OR1 NODE_2814_5198_cov_0.708730, whole genome shotgun sequence (5198 bp)
Overview 1 RT 1: 2231-5150 bp Neighborhood of RT #1 [2231, 5170] DUF2854 RVT_N RVT-GII GIIM Feature: gene Location: 2231-2464 bp Feature: gene Location: 2628-3176 bp Feature: domain Description: DUF2854 Location: 2691-3126 bp Feature: domain Description: DUF2854 Location: 26 91-3126 bp Feature: gene Location: 3938-5170 bp Feature: domain Description: RVT_N Location: 3989-4232 bp Feature: domain Description: RVT_N Location: 3989-4232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4274-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4274-4898 bp Feature: domain Description: GIIM Note: maturase Location: 4958-5150 bp Feature: domain Description: GIIM Note: maturase Location: 4958-5150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2854 (pfam11016), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QMEC01000027.1 Brasilonema octagenarum UFV-OR1 NODE_282_63172_cov_1.110541, whole genome shotgun sequence (63172 bp)
Overview 1 RT 1: 57109-62773 bp Neighborhood of RT #1 [57109, 62778] TPR RVT_N RVT-GII RVT-GII McrA RVT_N RVT-GII GIIM HNHc CRR7 Feature: gene Location: 57109-57336 bp Feature: gene Location: 57438-57584 bp Feature: domain Description: TPR Location: 57441-57519 bp Feature: domain Description: TPR Location: 57 441-57 519 bp Feature: gene Location: 58171-58743 bp Feature: domain Description: RVT_N Location: 58207-58447 bp Feature: domain Description: RVT_N Location: 58207 -58447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58504-58741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58504-587 41 bp Feature: gene Location: 58794-59741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58821-59154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58821-59154 bp Feature: domain Description: McrA Location: 59388-59712 bp Feature: domain Description: McrA Location: 59388-597 12 bp Feature: gene Location: 59952-60317 bp Feature: gene Location: 60410-62065 bp Feature: domain Description: RVT_N Location: 60461-60704 bp Feature: domain Description: RVT_N Location: 60461-607 04 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60746-61370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607 46-6137 0 bp Feature: domain Description: GIIM Note: maturase Location: 61430-61655 bp Feature: domain Description: GIIM Note: maturase Location: 61430-61655 bp Feature: domain Description: HNHc Note: nucleases Location: 61877-62036 bp Feature: domain Description: HNHc Note: nucleases Location: 6187 7 -62036 bp Feature: gene Location: 62518-62778 bp Feature: domain Description: CRR7 Location: 62521-62773 bp Feature: domain Description: CRR7 Location: 62521-627 7 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT_N (pfam13655), RVT-GII, McrA (COG4058), GIIM (pfam08388), HNHc (smart00507), CRR7 (pfam12095)

Seq: QMEC01000052.1 Brasilonema octagenarum UFV-OR1 NODE_432_45421_cov_1.171009, whole genome shotgun sequence (45421 bp)
Overview 1 RT 1: 36418-42710 bp Neighborhood of RT #1 [36418, 42784] DUF820 Methyltransf_25 RVT_N RVT-GII GIIM McrA CHAT Feature: gene Location: 36418-36996 bp Feature: domain Description: DUF820 Location: 36496-36925 bp Feature: domain Description: DUF8 20 Location: 36496-36925 bp Feature: gene Location: 37146-37889 bp Feature: domain Description: Methyltransf_25 Location: 37287-37554 bp Feature: domain Description: Methyltransf_25 Location: 3728 7-37554 bp Feature: gene Location: 38141-39910 bp Feature: domain Description: RVT_N Location: 38183-38429 bp Feature: domain Description: RVT_N Location: 38 18 3-38 429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38471-39164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 471-39164 bp Feature: domain Description: GIIM Note: maturase Location: 39272-39497 bp Feature: domain Description: GIIM Note: maturase Location: 39272-39497 bp Feature: domain Description: McrA Location: 39554-39857 bp Feature: domain Description: McrA Location: 39554-398 57 bp Feature: gene Location: 40050-40298 bp Feature: gene Location: 40925-42784 bp Feature: domain Description: CHAT Location: 42269-42710 bp Feature: domain Description: CHAT Location: 42269-42710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, Methyltransf_25 (pfam13649), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), CHAT (pfam12770)

Seq: QMEC01000060.1 Brasilonema octagenarum UFV-OR1 NODE_478_41885_cov_1.220057, whole genome shotgun sequence (41885 bp)
Overview 1 RT 1: 545-4080 bp Neighborhood of RT #1 [545, 4118] RVT_N RVT-GII McrA argC_other DUF98 Feature: gene Location: 545-2125 bp Feature: domain Description: RVT_N Location: 581-827 bp Feature: domain Description: RVT_N Location: 581-827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1535 bp Feature: domain Description: McrA Location: 1766-2099 bp Feature: domain Description: McrA Location: 1766-209 9 bp Feature: gene Location: 2417-3388 bp Feature: domain Description: argC_other Location: 2432-3365 bp Feature: domain Description: argC_other Location: 2432-3365 bp Feature: gene Location: 3489-4118 bp Feature: domain Description: DUF98 Location: 3633-4080 bp Feature: domain Description: DUF9 8 Location: 3633-4080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), argC_other (TIGR01851), DUF98 (pfam01947)

Seq: QMEC01000312.1 Brasilonema octagenarum UFV-OR1 NODE_7277_1461_cov_0.000000, whole genome shotgun sequence (1461 bp)
Overview 1 RT 1: 32-1439 bp Neighborhood of RT #1 [32, 1459] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 32-1459 bp Feature: domain Description: RVT_N Location: 38-218 bp Feature: domain Description: RVT_N Location: 38-218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281-701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281-701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710 -875 bp Feature: domain Description: McrA Location: 1106-1439 bp Feature: domain Description: McrA Location: 110 6-1439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: QMEC01000111.1 Brasilonema octagenarum UFV-OR1 NODE_740_28228_cov_0.984418, whole genome shotgun sequence (28228 bp)
Overview 1 RT 1: 23813-28078 bp Neighborhood of RT #1 [23813, 28161] HEAT_2 EZ_HEAT EZ_HEAT MPP_1 RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 23813-25276 bp Feature: domain Description: HEAT_2 Location: 24554-24767 bp Feature: domain Description: HEAT_2 Location: 24554-24767 bp Feature: domain Description: EZ_HEAT Location: 24785-24860 bp Feature: domain Description: EZ_HEAT Location: 24785-24860 bp Feature: domain Description: EZ_HEAT Location: 24869-24947 bp Feature: domain Description: EZ_HEAT Location: 24869-24947 bp Feature: domain Description: MPP_1 Location: 25076-25256 bp Feature: domain Description: MPP_1 Location: 25076-25256 bp Feature: gene Location: 26337-26480 bp Feature: gene Location: 26566-27210 bp Feature: domain Description: RVT_N Location: 26602-26842 bp Feature: domain Description: RVT_N Location: 26602-26842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26899-27178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26899-27178 bp Feature: gene Location: 27376-28161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27379-27523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27379-27523 bp Feature: domain Description: McrA Location: 27754-28078 bp Feature: domain Description: McrA Location: 27754-28078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), EZ_HEAT (smart00567), MPP_1 (cd07400), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: QMEC01000118.1 Brasilonema octagenarum UFV-OR1 NODE_768_26967_cov_1.055923, whole genome shotgun sequence (26967 bp)
Overview 1 RT 1: 282-4427 bp Neighborhood of RT #1 [282, 4427] RRXRR RVT_N RVT-GII GIIM HNH RRXRR HNHc Feature: gene Location: 282-482 bp Feature: domain Description: RRXRR Location: 288-441 bp Feature: domain Description: RRXRR Location: 288-441 bp Feature: gene Location: 1130-2971 bp Feature: domain Description: RVT_N Location: 1244-1490 bp Feature: domain Description: RVT_N Location: 12 44-1490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1532-2234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1532-2234 bp Feature: domain Description: GIIM Note: maturase Location: 2336-2567 bp Feature: domain Description: GIIM Note: maturase Location: 2336-2567 bp Feature: domain Description: HNH Note: nucleases Location: 2789-2927 bp Feature: domain Description: HNH Note: nucleases Location: 2789-2927 bp Feature: gene Location: 2984-4102 bp Feature: domain Description: RRXRR Location: 3050-3392 bp Feature: domain Description: RRXRR Location: 3050-3392 bp Feature: domain Description: HNHc Note: nucleases Location: 3416-3563 bp Feature: domain Description: HNHc Note: nucleases Location: 3416-3563 bp Feature: gene Location: 4203-4427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RRXRR (pfam14239), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HNHc (smart00507)

Seq: QMEC01000126.1 Brasilonema octagenarum UFV-OR1 NODE_842_24838_cov_0.007263, whole genome shotgun sequence (24838 bp)
Overview 1 RT 1: 22244-24835 bp Neighborhood of RT #1 [22244, 24835] E1_enzyme_family RVT-GII McrA RVT_N Feature: gene Location: 22244-22378 bp Feature: gene Location: 22391-22678 bp Feature: domain Description: E1_enzyme_family Location: 22457-22664 bp Feature: domain Description: E1_enzyme_family Location: 22457-22664 bp Feature: gene Location: 22877-24049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22880-23465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22880-23465 bp Feature: domain Description: McrA Location: 23696-24029 bp Feature: domain Description: McrA Location: 23696-24029 bp Feature: gene Location: 24066-24452 bp Feature: domain Description: RVT_N Location: 24102-24342 bp Feature: domain Description: RVT_N Location: 24102-24342 bp Feature: gene Location: 24707-24835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT E1_enzyme_family (cl22428), RVT-GII, McrA (COG4058), RVT_N (pfam13655)

Seq: QMEC01000134.1 Brasilonema octagenarum UFV-OR1 NODE_890_23527_cov_1.249872, whole genome shotgun sequence (23527 bp)
Overview 1 RT 1: 11824-14900 bp Neighborhood of RT #1 [11824, 14900] DUF2808 RVT_N RVT-GII GIIM McrA Feature: gene Location: 11824-12078 bp Feature: gene Location: 12155-12451 bp Feature: domain Description: DUF2808 Location: 12161-12428 bp Feature: domain Description: DUF2808 Location: 12161-12428 bp Feature: gene Location: 12626-14191 bp Feature: domain Description: RVT_N Location: 12662-12902 bp Feature: domain Description: RVT_N Location: 12662-12902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12959-13613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12959-13613 bp Feature: domain Description: GIIM Note: maturase Location: 13670-13808 bp Feature: domain Description: GIIM Note: maturase Location: 13670-13808 bp Feature: domain Description: McrA Location: 13934-14171 bp Feature: domain Description: McrA Location: 13934-14 171 bp Feature: gene Location: 14466-14618 bp Feature: gene Location: 14715-14900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2808 (pfam10989), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)