myRT

myRT report for GCA_012922115.1_ASM1292211v1

Download annotations/find similar RTs

Seq: JABAQG010000001.1 Streptomyces sp. RLA2-12 RLA212_1, whole genome shotgun sequence (10825588 bp)
Overview 1 RT 1: 1521257-1527725 bp 2 RT 2: 1903442-1907513 bp 3 RT 3: 2146040-2152874 bp 4 RT 4: 9918421-9923445 bp Neighborhood of RT #1 [1521257, 1528156] SufI RVT-GII RVT-GII GIIM HTH_32 DDE_3 DDE_5 Neighborhood of RT #2 [1903442, 1907513] Resolvase COG3905 RVT-GII GIIM COG3464 COG3464 Neighborhood of RT #3 [2146040, 2152874] RimI Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM UDG_F5_TTUDGB_like Neighborhood of RT #4 [9918421, 9923813] DUF4096 DDE_Tnp_1 RVT-GII DUF772 AccC Feature: gene Location: 1521257-1521913 bp Feature: gene Location: 1521989-1523614 bp Feature: domain Description: SufI Location: 1522007-1523609 bp Feature: domain Description: SufI Location: 1 522007-1 523609 bp Feature: gene Location: 1523869-1524492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1523872-1523968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 523872-1 523968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1523974-1524106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 523974-1 5241 06 bp Feature: domain Description: GIIM Note: maturase Location: 1524187-1524409 bp Feature: domain Description: GIIM Note: maturase Location: 1 5241 87-1 524409 bp Feature: gene Location: 1525736-1526812 bp Feature: domain Description: HTH_32 Location: 1525928-1526138 bp Feature: domain Description: HTH_32 Location: 1 525928-1 5261 38 bp Feature: domain Description: DDE_3 Location: 1526261-1526573 bp Feature: domain Description: DDE_3 Location: 1 526261 -1 526573 bp Feature: gene Location: 1526927-1528156 bp Feature: domain Description: DDE_5 Location: 1526939-1527725 bp Feature: domain Description: DDE_5 Location: 1 526939-1 527725 bp Feature: gene Location: 1903442-1904047 bp Feature: domain Description: Resolvase Location: 1903454-1903892 bp Feature: domain Description: Resolvase Location: 1 903454-1 903892 bp Feature: gene Location: 1904180-1904527 bp Feature: domain Description: COG3905 Location: 1904381-1904498 bp Feature: domain Description: COG3905 Location: 1 904381 -1 904498 bp Feature: gene Location: 1903898-1905388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1904510-1904951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 90451 0-1 904951 bp Feature: domain Description: GIIM Note: maturase Location: 1905026-1905245 bp Feature: domain Description: GIIM Note: maturase Location: 1 905026-1 905245 bp Feature: gene Location: 1905511-1907040 bp Feature: domain Description: COG3464 Location: 1905517-1906162 bp Feature: domain Description: COG3464 Location: 1 90551 7-1 9061 62 bp Feature: domain Description: COG3464 Location: 1906684-1907029 bp Feature: domain Description: COG3464 Location: 1 906684-1 907029 bp Feature: gene Location: 1907226-1907513 bp Feature: gene Location: 2146040-2146591 bp Feature: domain Description: RimI Location: 2146109-2146505 bp Feature: domain Description: RimI Location: 21 461 09-21 46505 bp Feature: gene Location: 2147896-2149743 bp Feature: domain Description: Resolvase Location: 2147908-2148346 bp Feature: domain Description: Resolvase Location: 21 47908-21 48346 bp Feature: domain Description: Recombinase Location: 2148436-2148799 bp Feature: domain Description: Recombinase Location: 21 48436-21 48799 bp Feature: domain Description: Zn_ribbon_recom Location: 2148838-2149030 bp Feature: domain Description: Zn_ribbon_recom Location: 21 48838-21 49030 bp Feature: gene Location: 2150337-2151077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2150343-2150646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 50343-21 50646 bp Feature: domain Description: GIIM Note: maturase Location: 2150718-2150937 bp Feature: domain Description: GIIM Note: maturase Location: 21 5071 8-21 50937 bp Feature: gene Location: 2151788-2152570 bp Feature: domain Description: UDG_F5_TTUDGB_like Location: 2151890-2152526 bp Feature: domain Description: UDG_F5_TTUDGB_like Location: 21 51 890-21 52526 bp Feature: gene Location: 2152611-2152874 bp Feature: gene Location: 9918421-9918978 bp Feature: domain Description: DUF4096 Location: 9918730-9918964 bp Feature: domain Description: DUF4096 Location: 991 8730-991 8964 bp Feature: gene Location: 9918982-9919527 bp Feature: domain Description: DDE_Tnp_1 Location: 9919015-9919384 bp Feature: domain Description: DDE_Tnp_1 Location: 991 901 5-991 9384 bp Feature: gene Location: 9919916-9921385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9920237-9920921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9920237-9920921 bp Feature: gene Location: 9921916-9922218 bp Feature: domain Description: DUF772 Location: 9922024-9922144 bp Feature: domain Description: DUF772 Location: 9922024-99221 44 bp Feature: gene Location: 9922491-9923813 bp Feature: domain Description: AccC Location: 9922740-9923445 bp Feature: domain Description: AccC Location: 9922740-9923445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufI (COG2132), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), DDE_3 (pfam13358), DDE_5 (pfam13546), Resolvase (smart00857), COG3905 (Predicted transcriptional regulator ), COG3464 (Transposase ), RimI (COG0456)
Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), UDG_F5_TTUDGB_like, DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609), DUF772 (pfam05598), AccC (COG0439)