myRT

myRT report for GCA_012927365.1_ASM1292736v1

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Seq: JABBGL010000019.1 Sphingobium sp. TB-6 contig19, whole genome shotgun sequence (80434 bp)
Overview 1 RT 1: 99-5899 bp 2 RT 2: 22508-28195 bp Neighborhood of RT #1 [99, 5955] RVT-UG8 INT_C_like_1 Arm-DNA-bind_3 INT_P4_C Neighborhood of RT #2 [22508, 28195] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 99-1052 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 624-1026 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 624-1 026 bp Feature: gene Location: 2528-4348 bp Feature: domain Description: INT_C_like_1 Location: 3680-4253 bp Feature: domain Description: INT_C_like_1 Location: 3680-4253 bp Feature: gene Location: 4681-5955 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4717-4939 bp Feature: domain Description: Arm-DNA-bind_3 Location: 471 7-4939 bp Feature: domain Description: INT_P4_C Location: 5371-5899 bp Feature: domain Description: INT_P4_C Location: 5371 -5899 bp Feature: gene Location: 22508-23089 bp Feature: gene Location: 23144-23653 bp Feature: gene Location: 23607-25454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23877-24708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23877-24708 bp Feature: domain Description: Intron_maturas2 Location: 24792-25074 bp Feature: domain Description: Intron_maturas2 Location: 24792-25074 bp Feature: domain Description: HNHc Note: nucleases Location: 25254-25398 bp Feature: domain Description: HNHc Note: nucleases Location: 25254-25398 bp Feature: gene Location: 26041-26880 bp Feature: gene Location: 26987-28195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, INT_C_like_1 (cd01184), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABBGL010000022.1 Sphingobium sp. TB-6 contig22, whole genome shotgun sequence (69371 bp)
Overview 1 RT 1: 6636-9382 bp Neighborhood of RT #1 [6636, 9861] CbpA RVT-GII NhoA COG4957 Feature: gene Location: 6636-6779 bp Feature: gene Location: 6812-7372 bp Feature: domain Description: CbpA Location: 6833-7205 bp Feature: domain Description: CbpA Location: 6833-72 05 bp Feature: gene Location: 7460-7720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7472-7670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7472 -7670 bp Feature: gene Location: 7921-8781 bp Feature: domain Description: NhoA Location: 7996-8737 bp Feature: domain Description: NhoA Location: 7996-8737 bp Feature: gene Location: 8962-9861 bp Feature: domain Description: COG4957 Location: 8971-9382 bp Feature: domain Description: COG4957 Location: 8971-9382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbpA (COG2214), RVT-GII, NhoA (COG2162), COG4957 (Predicted transcriptional regulator )

Seq: JABBGL010000031.1 Sphingobium sp. TB-6 contig31, whole genome shotgun sequence (31966 bp)
Overview 1 RT 1: 15480-20201 bp Neighborhood of RT #1 [15480, 20299] PIN_3 excise RVT-GII Intron_maturas2 HipA HipA_C Feature: gene Location: 15480-15929 bp Feature: domain Description: PIN_3 Location: 15483-15699 bp Feature: domain Description: PIN_3 Location: 15483 -15699 bp Feature: gene Location: 16055-16516 bp Feature: domain Description: excise Location: 16307-16445 bp Feature: domain Description: excise Location: 163 07-16445 bp Feature: gene Location: 16800-18371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16803-17604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16803 -17604 bp Feature: domain Description: Intron_maturas2 Location: 17742-18003 bp Feature: domain Description: Intron_maturas2 Location: 17742-18003 bp Feature: gene Location: 18651-19316 bp Feature: gene Location: 19067-20299 bp Feature: domain Description: HipA Location: 19163-19250 bp Feature: domain Description: HipA Location: 19163 -19250 bp Feature: domain Description: HipA_C Location: 19574-20201 bp Feature: domain Description: HipA_C Location: 19574-20201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_3 (pfam13470), excise (TIGR01764), RVT-GII, Intron_maturas2 (pfam01348), HipA (COG3550), HipA_C (pfam07804)

Seq: JABBGL010000047.1 Sphingobium sp. TB-6 contig47, whole genome shotgun sequence (2233 bp)
Overview 1 RT 1: 141-2151 bp Neighborhood of RT #1 [141, 2151] RVT_N RVT-GII YkfC Feature: gene Location: 141-1613 bp Feature: domain Description: RVT_N Location: 189-426 bp Feature: domain Description: RVT_N Location: 189-4 26 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 77-1116 bp Feature: domain Description: YkfC Location: 1197-1461 bp Feature: domain Description: YkfC Location: 1197-14 61 bp Feature: gene Location: 1603-1842 bp Feature: gene Location: 1936-2151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)