myRT

myRT report for GCA_012932785.1_ASM1293278v1

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Seq: ANCI01000003.1 Chroococcidiopsis sp. PCC 6712 Ga0438089_03, whole genome shotgun sequence (5644658 bp)
Overview 1 RT 1: 256033-259675 bp 2 RT 2: 434007-437442 bp 3 RT 3: 1093301-1099460 bp 4 RT 4: 5099832-5107768 bp 5 RT 5: 5362736-5368940 bp Neighborhood of RT #1 [256033, 259716] RVT_N RVT-GII RVT-GII GIIM HNHc HTH_3 Neighborhood of RT #2 [434007, 437753] DDE_Tnp_1 RVT_N RVT-GII COG5421 DUF4277 Neighborhood of RT #3 [1093301, 1099843] YfmG DDE_Tnp_1_3 RVT-DGRs Tn7_Tnp_TnsA_N Tn7_Tnp_TnsA_C HTH_32 rve Mu-transpos_C Neighborhood of RT #4 [5099832, 5107776] PRK05399 YejR RVT_N RVT-GII GIIM HNHc eubact_ribD PhaF Neighborhood of RT #5 [5362736, 5368945] RsmI Fer4_13 RVT_N RVT-GII YkfC HNHc psbU OmpR Feature: gene Location: 256033-256260 bp Feature: gene Location: 257093-257434 bp Feature: RT Description: RVT_N Location: 257132-257375 bp Feature: RT Description: RVT_N Location: 2571 32-257375 bp Feature: gene Location: 257466-257852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257469-257763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257469-257763 bp Feature: gene Location: 257939-258886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257942-258098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257942-258098 bp Feature: domain Description: GIIM Note: maturase Location: 258197-258431 bp Feature: domain Description: GIIM Note: maturase Location: 2581 97-258431 bp Feature: domain Description: HNHc Note: nucleases Location: 258614-258767 bp Feature: domain Description: HNHc Note: nucleases Location: 25861 4-258767 bp Feature: gene Location: 258983-259471 bp Feature: gene Location: 259468-259716 bp Feature: domain Description: HTH_3 Location: 259516-259675 bp Feature: domain Description: HTH_3 Location: 25951 6-259675 bp Feature: gene Location: 434007-434258 bp Feature: gene Location: 434293-434961 bp Feature: domain Description: DDE_Tnp_1 Location: 434503-434833 bp Feature: domain Description: DDE_Tnp_1 Location: 434503-434833 bp Feature: gene Location: 435084-435776 bp Feature: RT Description: RVT_N Location: 435183-435429 bp Feature: RT Description: RVT_N Location: 4351 83-435429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435480-435756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435480-435756 bp Feature: gene Location: 436130-437026 bp Feature: domain Description: COG5421 Location: 436139-436928 bp Feature: domain Description: COG5421 Location: 4361 39-436928 bp Feature: gene Location: 437106-437753 bp Feature: domain Description: DUF4277 Location: 437124-437442 bp Feature: domain Description: DUF4277 Location: 4371 24-437442 bp Feature: gene Location: 1093301-1093816 bp Feature: domain Description: YfmG Location: 1093313-1093802 bp Feature: domain Description: YfmG Location: 1 09331 3-1 093802 bp Feature: gene Location: 1094029-1094907 bp Feature: domain Description: DDE_Tnp_1_3 Location: 1094344-1094803 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 094344-1 094803 bp Feature: gene Location: 1094985-1096052 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1095195-1095837 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 0951 95-1 095837 bp Feature: gene Location: 1096427-1096909 bp Feature: gene Location: 1097129-1099843 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 1097351-1097618 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 1 097351 -1 09761 8 bp Feature: domain Description: Tn7_Tnp_TnsA_C Location: 1097636-1097843 bp Feature: domain Description: Tn7_Tnp_TnsA_C Location: 1 097636-1 097843 bp Feature: domain Description: HTH_32 Location: 1098284-1098536 bp Feature: domain Description: HTH_32 Location: 1 098284-1 098536 bp Feature: domain Description: rve Location: 1098662-1099025 bp Feature: domain Description: rve Location: 1 098662-1 099025 bp Feature: domain Description: Mu-transpos_C Location: 1099307-1099460 bp Feature: domain Description: Mu-transpos_C Location: 1 099307-1 099460 bp Feature: gene Location: 5099832-5102486 bp Feature: domain Description: PRK05399 Location: 5099898-5102475 bp Feature: domain Description: PRK05399 Location: 5099898-51 02475 bp Feature: gene Location: 5102640-5103788 bp Feature: domain Description: YejR Location: 5102724-5103747 bp Feature: domain Description: YejR Location: 51 02724-51 03747 bp Feature: gene Location: 5104460-5106136 bp Feature: RT Description: RVT_N Location: 5104505-5104745 bp Feature: RT Description: RVT_N Location: 51 04505-51 04745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5104799-5105435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 04799-51 05435 bp Feature: domain Description: GIIM Note: maturase Location: 5105510-5105744 bp Feature: domain Description: GIIM Note: maturase Location: 51 0551 0-51 05744 bp Feature: domain Description: HNHc Note: nucleases Location: 5105960-5106122 bp Feature: domain Description: HNHc Note: nucleases Location: 51 05960-51 061 22 bp Feature: gene Location: 5106279-5107364 bp Feature: domain Description: eubact_ribD Location: 5106312-5107344 bp Feature: domain Description: eubact_ribD Location: 51 0631 2-51 07344 bp Feature: gene Location: 5107408-5107776 bp Feature: domain Description: PhaF Location: 5107441-5107768 bp Feature: domain Description: PhaF Location: 51 07441 -51 07768 bp Feature: gene Location: 5362736-5363584 bp Feature: domain Description: RsmI Location: 5362760-5363579 bp Feature: domain Description: RsmI Location: 5362760-5363579 bp Feature: gene Location: 5363627-5363968 bp Feature: domain Description: Fer4_13 Location: 5363696-5363858 bp Feature: domain Description: Fer4_1 3 Location: 5363696-5363858 bp Feature: gene Location: 5364778-5366571 bp Feature: RT Description: RVT_N Location: 5364817-5365063 bp Feature: RT Description: RVT_N Location: 536481 7-5365063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5365105-5365783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53651 05-5365783 bp Feature: domain Description: YkfC Location: 5366050-5366245 bp Feature: domain Description: YkfC Location: 5366050-5366245 bp Feature: domain Description: HNHc Note: nucleases Location: 5366299-5366452 bp Feature: domain Description: HNHc Note: nucleases Location: 5366299-5366452 bp Feature: gene Location: 5367396-5367815 bp Feature: domain Description: psbU Location: 5367402-5367813 bp Feature: domain Description: psbU Location: 5367402-536781 3 bp Feature: gene Location: 5368190-5368945 bp Feature: domain Description: OmpR Location: 5368250-5368940 bp Feature: domain Description: OmpR Location: 5368250-5368940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HTH_3 (pfam01381), DDE_Tnp_1 (pfam01609), COG5421 (Transposase ), DUF4277 (pfam14104), YfmG (COG1262), DDE_Tnp_1_3 (pfam13612)
RVT-DGRs, Tn7_Tnp_TnsA_N (pfam08722), Tn7_Tnp_TnsA_C (pfam08721), HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299), PRK05399 (DNA mismatch repair protein MutS; Provisional), YejR (COG0523), eubact_ribD (TIGR00326), PhaF (COG3937)
RsmI (COG0313), Fer4_13 (pfam13370), YkfC (COG3344), psbU (PRK02515), OmpR (COG0745)