myRT

myRT report for GCA_012933185.1_ASM1293318v1

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Seq: JABBXR010000001.1 Enterococcus faecium strain A976, whole genome shotgun sequence (145444 bp)
Overview 1 RT 1: 13140-17881 bp Neighborhood of RT #1 [13140, 17958] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 13140-13643 bp Feature: domain Description: ArdA Location: 13158-13629 bp Feature: domain Description: ArdA Location: 1 31 58-1 3629 bp Feature: gene Location: 13645-13854 bp Feature: gene Location: 13984-15894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14317-15055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 431 7-1 5055 bp Feature: domain Description: HNHc Note: nucleases Location: 15610-15775 bp Feature: domain Description: HNHc Note: nucleases Location: 1 561 0-1 5775 bp Feature: gene Location: 16403-16552 bp Feature: gene Location: 16774-17958 bp Feature: domain Description: HTH_XRE Location: 16804-16948 bp Feature: domain Description: HTH_XRE Location: 1 6804-1 6948 bp Feature: domain Description: Rol_Rep_N Location: 16981-17245 bp Feature: domain Description: Rol_Rep_N Location: 1 6981 -1 7245 bp Feature: domain Description: Rep_trans Location: 17269-17881 bp Feature: domain Description: Rep_trans Location: 1 7269-1 7881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: JABBXR010000008.1 Enterococcus faecium strain A976, whole genome shotgun sequence (77920 bp)
Overview 1 RT 1: 44218-50350 bp Neighborhood of RT #1 [44218, 50418] HTH_XRE RVT-AbiP2 COG2865 INT_ICEBs1_C_like Feature: gene Location: 44218-44991 bp Feature: gene Location: 45105-45341 bp Feature: domain Description: HTH_XRE Location: 45147-45333 bp Feature: domain Description: HTH_XRE Location: 45147-45333 bp Feature: gene Location: 45513-47009 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 45921-46377 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 4592 1-46377 bp Feature: gene Location: 47155-48603 bp Feature: domain Description: COG2865 Location: 47161-48559 bp Feature: domain Description: COG2 865 Location: 47161-48559 bp Feature: gene Location: 49192-50418 bp Feature: domain Description: INT_ICEBs1_C_like Location: 49795-50350 bp Feature: domain Description: INT_ICEBs1_C_like Location: 49795-50350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-AbiP2, COG2865 (Predicted transcriptional regulator, contains HTH domain ), INT_ICEBs1_C_like (cd01189)