myRT

myRT report for GCA_012940005.1_ASM1294000v1

Download annotations/find similar RTs

Seq: SPMX01000024.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c24, whole genome shotgun sequence (31421 bp)
Overview 1 RT 1: 696-6200 bp Neighborhood of RT #1 [696, 6436] YfmG RVT-DGRs Hrd YfmG Feature: gene Location: 696-1586 bp Feature: domain Description: YfmG Location: 837-1518 bp Feature: domain Description: YfmG Location: 837-1 51 8 bp Feature: gene Location: 1913-2926 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2123-2711 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 23-271 1 bp Feature: gene Location: 2907-3395 bp Feature: domain Description: Hrd Location: 3147-3348 bp Feature: domain Description: Hrd Location: 31 47-3348 bp Feature: gene Location: 3392-6436 bp Feature: domain Description: YfmG Location: 5522-6200 bp Feature: domain Description: YfmG Location: 5522-6200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Hrd (LOAD_Hrd)

Seq: SPMX01000032.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c32, whole genome shotgun sequence (11922 bp)
Overview 1 RT 1: 6458-11921 bp Neighborhood of RT #1 [6458, 11921] RVT-GII GIIM Feature: gene Location: 6458-7549 bp Feature: gene Location: 7598-7840 bp Feature: gene Location: 8040-9413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8352-8997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8352 -8997 bp Feature: domain Description: GIIM Note: maturase Location: 9048-9273 bp Feature: domain Description: GIIM Note: maturase Location: 9048-92 73 bp Feature: gene Location: 9534-11534 bp Feature: gene Location: 11571-11921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SPMX01000034.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c34, whole genome shotgun sequence (23551 bp)
Overview 1 RT 1: 526-5972 bp Neighborhood of RT #1 [526, 6220] YfmG RVT-DGRs HRDC YfmG Feature: gene Location: 526-1446 bp Feature: domain Description: YfmG Location: 685-1369 bp Feature: domain Description: YfmG Location: 685-13 69 bp Feature: gene Location: 1780-2787 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1990-2584 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1990-2584 bp Feature: gene Location: 2797-3267 bp Feature: domain Description: HRDC Location: 3046-3241 bp Feature: domain Description: HRDC Location: 3 046-3 241 bp Feature: gene Location: 3287-6220 bp Feature: domain Description: YfmG Location: 5300-5972 bp Feature: domain Description: YfmG Location: 53 00-5972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, HRDC (smart00341)

Seq: SPMX01000038.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c38, whole genome shotgun sequence (38504 bp)
Overview 1 RT 1: 2-2249 bp Neighborhood of RT #1 [2, 2249] RVT-GII SsuE Feature: gene Location: 2-178 bp Feature: gene Location: 469-753 bp Feature: gene Location: 816-956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 6-918 bp Feature: gene Location: 1372-1926 bp Feature: domain Description: SsuE Location: 1387-1909 bp Feature: domain Description: SsuE Location: 1387-1909 bp Feature: gene Location: 1953-2249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SsuE (COG0431)

Seq: SPMX01000043.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c43, whole genome shotgun sequence (62725 bp)
Overview 1 RT 1: 15090-26059 bp Neighborhood of RT #1 [15090, 26130] Peptidase_C14 COG5635 pfam03781 Avd_like RVT-DGRs COG5635 COG5635 pfam03781 Peptidase_C14 Peptidase_C25 Feature: gene Location: 15090-18704 bp Feature: domain Description: Peptidase_C14 Location: 15120-15876 bp Feature: domain Description: Peptidase_C14 Location: 15 120-15 876 bp Feature: domain Description: COG5635 Location: 16434-17631 bp Feature: domain Description: COG5 635 Location: 16434-17631 bp Feature: domain Description: pfam03781 Location: 18039-18681 bp Feature: domain Description: pfam03781 Location: 18039-18681 bp Feature: gene Location: 19269-20246 bp Feature: domain Description: Avd_like Location: 20070-20193 bp Feature: domain Description: Avd_like Location: 20070-20193 bp Feature: gene Location: 19524-20324 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19530-20106 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 195 30-20106 bp Feature: gene Location: 20416-23187 bp Feature: domain Description: COG5635 Location: 20803-20902 bp Feature: domain Description: COG5 635 Location: 20803-20902 bp Feature: domain Description: COG5635 Location: 21175-22099 bp Feature: domain Description: COG5 635 Location: 21175 -22099 bp Feature: domain Description: pfam03781 Location: 22387-23164 bp Feature: domain Description: pfam03781 Location: 22387-23164 bp Feature: gene Location: 23299-26130 bp Feature: domain Description: Peptidase_C14 Location: 23326-24085 bp Feature: domain Description: Peptidase_C14 Location: 23326-24085 bp Feature: domain Description: Peptidase_C25 Location: 25708-26059 bp Feature: domain Description: Peptidase_C25 Location: 25 708-2605 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C14 (pfam00656), COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, Peptidase_C25 (pfam01364)

Seq: SPMX01000006.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c6, whole genome shotgun sequence (278179 bp)
Overview 1 RT 1: 140501-145433 bp Neighborhood of RT #1 [140501, 145433] Ub-Mut7C Mut7-C GIIM RVT-GII COG3177 Feature: gene Location: 140501-141325 bp Feature: domain Description: Ub-Mut7C Location: 140582-140816 bp Feature: domain Description: Ub-Mut7C Location: 140582-140816 bp Feature: domain Description: Mut7-C Location: 140861-141290 bp Feature: domain Description: Mut7-C Location: 14086 1-141290 bp Feature: gene Location: 141497-141736 bp Feature: domain Description: GIIM Note: maturase Location: 141506-141650 bp Feature: domain Description: GIIM Note: maturase Location: 141506 -1416 50 bp Feature: gene Location: 141779-142576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142070-142541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142070-142541 bp Feature: gene Location: 143749-144891 bp Feature: domain Description: COG3177 Location: 143770-144853 bp Feature: domain Description: COG3177 Location: 143770-144853 bp Feature: gene Location: 145089-145433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ub-Mut7C (pfam14451), Mut7-C (pfam01927), GIIM (pfam08388), RVT-GII, COG3177 (Fic family protein )

Seq: SPMX01000061.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c61, whole genome shotgun sequence (19217 bp)
Overview 1 RT 1: 1-1860 bp Neighborhood of RT #1 [1, 1871] RVT-GII PTPS Feature: gene Location: 1-510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-511 bp Feature: gene Location: 886-1107 bp Feature: gene Location: 1428-1871 bp Feature: domain Description: PTPS Location: 1437-1860 bp Feature: domain Description: PTPS Location: 1437 -1860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PTPS (pfam01242)

Seq: SPMX01000062.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c62, whole genome shotgun sequence (28832 bp)
Overview 1 RT 1: 3-1910 bp Neighborhood of RT #1 [3, 1910] RVT-GII GIIM DUF4351 Feature: gene Location: 3-647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-261 bp Feature: domain Description: GIIM Note: maturase Location: 330-558 bp Feature: domain Description: GIIM Note: maturase Location: 330-558 bp Feature: gene Location: 743-1417 bp Feature: domain Description: DUF4351 Location: 1244-1403 bp Feature: domain Description: DUF4351 Location: 1244-1403 bp Feature: gene Location: 1446-1910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4351 (pfam14261)

Seq: SPMX01000084.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c84, whole genome shotgun sequence (17042 bp)
Overview 1 RT 1: 9019-12436 bp Neighborhood of RT #1 [9019, 12436] MDR_yhdh RVT-GII INT_RitC_C_like Feature: gene Location: 9019-10002 bp Feature: domain Description: MDR_yhdh Location: 9025-9994 bp Feature: domain Description: MDR_yhdh Location: 9 025-9 9 9 4 bp Feature: gene Location: 10070-10480 bp Feature: gene Location: 10965-11252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11016-11157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11016-11157 bp Feature: gene Location: 11289-11726 bp Feature: domain Description: INT_RitC_C_like Location: 11385-11607 bp Feature: domain Description: INT_RitC_C_like Location: 11385-11607 bp Feature: gene Location: 12113-12436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MDR_yhdh (cd08288), RVT-GII, INT_RitC_C_like (cd01182)

Seq: SPMX01000092.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_c92, whole genome shotgun sequence (21557 bp)
Overview 1 RT 1: 13402-21355 bp Neighborhood of RT #1 [13402, 21555] TIR_2 AAA_16 YfmG Avd_like RVT-DGRs TIR_2 YfmG GIIM RVT-GII COG5659 Feature: gene Location: 13402-16206 bp Feature: domain Description: TIR_2 Location: 13426-13810 bp Feature: domain Description: TIR_2 Location: 13426-13810 bp Feature: domain Description: AAA_16 Location: 14014-14431 bp Feature: domain Description: AAA_16 Location: 14014-14431 bp Feature: domain Description: YfmG Location: 15517-16147 bp Feature: domain Description: YfmG Location: 15517-16147 bp Feature: gene Location: 16632-17036 bp Feature: domain Description: Avd_like Location: 16716-17025 bp Feature: domain Description: Avd_like Location: 16716-17025 bp Feature: gene Location: 17221-18234 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17308-17956 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17308-17956 bp Feature: gene Location: 18235-19497 bp Feature: domain Description: TIR_2 Location: 18250-18574 bp Feature: domain Description: TIR_2 Location: 18250-18574 bp Feature: domain Description: YfmG Location: 18652-19441 bp Feature: domain Description: YfmG Location: 18652-19441 bp Feature: gene Location: 19759-20049 bp Feature: domain Description: GIIM Note: maturase Location: 19768-19915 bp Feature: domain Description: GIIM Note: maturase Location: 19768-19915 bp Feature: gene Location: 20083-20934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20086-20716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20086-20716 bp Feature: gene Location: 21079-21555 bp Feature: domain Description: COG5659 Location: 21142-21355 bp Feature: domain Description: COG5659 Location: 21142-21355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), AAA_16 (pfam13191), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, GIIM (pfam08388), RVT-GII, COG5659 (SRSO17 transposase )

Seq: SPMX01000143.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_rep_c198, whole genome shotgun sequence (2719 bp)
Overview 1 RT 1: 588-2718 bp Neighborhood of RT #1 [588, 2717] RVT-GII GIIM HTH_Tnp_1 Feature: gene Location: 588-935 bp Feature: gene Location: 959-1390 bp Feature: gene Location: 1458-2264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506-1878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1947-2172 bp Feature: domain Description: GIIM Note: maturase Location: 1947-2172 bp Feature: gene Location: 2442-2717 bp Feature: domain Description: HTH_Tnp_1 Location: 2583-2718 bp Feature: domain Description: HTH_Tnp_1 Location: 2583-2718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527)

Seq: SPMX01000150.1 Candidatus Accumulibacter phosphatis strain SBR_L PAO6_binned_rep_c205, whole genome shotgun sequence (4358 bp)
Overview 1 RT 1: 2-2335 bp Neighborhood of RT #1 [2, 2895] RVT-GII rve Feature: gene Location: 2-649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-524 bp Feature: gene Location: 1017-1355 bp Feature: gene Location: 1453-2895 bp Feature: domain Description: rve Location: 1987-2335 bp Feature: domain Description: rve Location: 1987-2335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rve (pfam00665)