myRT

myRT report for GCA_012952285.1_ASM1295228v1

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Seq: JAATHK010000001.1 Enterococcus faecium strain VRE32524, whole genome shotgun sequence (2951726 bp)
Overview 1 RT 1: 1065040-1068803 bp 2 RT 2: 1077827-1094890 bp 3 RT 3: 1258036-1263657 bp 4 RT 4: 2808217-2813257 bp Neighborhood of RT #1 [1065040, 1068889] RVT-GII Intron_maturas2 HNHc PrgI Neighborhood of RT #2 [1077827, 1096152] YtxK COG4646 RVT-GII Intron_maturas2 HNHc HELICc RVT_N RVT-GII GIIM ArdC YodL DUF3849 LPD18 LPD16 LPD16 Neighborhood of RT #3 [1258036, 1263812] SpaA SpaA SpaA TQ TQ LPXTG_anchor RVT-GII SpaA Neighborhood of RT #4 [2808217, 2813271] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 1065040-1065711 bp Feature: gene Location: 1065826-1066041 bp Feature: gene Location: 1066287-1068119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066551-1067382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 066551 -1 067382 bp Feature: domain Description: Intron_maturas2 Location: 1067454-1067769 bp Feature: domain Description: Intron_maturas2 Location: 1 067454-1 067769 bp Feature: domain Description: HNHc Note: nucleases Location: 1067916-1068090 bp Feature: domain Description: HNHc Note: nucleases Location: 1 06791 6-1 068090 bp Feature: gene Location: 1068195-1068497 bp Feature: gene Location: 1068515-1068889 bp Feature: domain Description: PrgI Location: 1068533-1068803 bp Feature: domain Description: PrgI Location: 1 068533-1 068803 bp Feature: gene Location: 1077827-1084501 bp Feature: domain Description: YtxK Location: 1081175-1081910 bp Feature: domain Description: YtxK Location: 1 081 1 75-1 081 91 0 bp Feature: domain Description: COG4646 Location: 1081976-1084346 bp Feature: domain Description: COG4646 Location: 1 081 976-1 084346 bp Feature: gene Location: 1084672-1084917 bp Feature: gene Location: 1084992-1086779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085262-1086054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 085262-1 086054 bp Feature: domain Description: Intron_maturas2 Location: 1086159-1086372 bp Feature: domain Description: Intron_maturas2 Location: 1 0861 59-1 086372 bp Feature: domain Description: HNHc Note: nucleases Location: 1086555-1086741 bp Feature: domain Description: HNHc Note: nucleases Location: 1 086555-1 086741 bp Feature: gene Location: 1086923-1087426 bp Feature: domain Description: HELICc Location: 1087001-1087346 bp Feature: domain Description: HELICc Location: 1 087001 -1 087346 bp Feature: gene Location: 1088005-1089675 bp Feature: domain Description: RVT_N Location: 1088050-1088293 bp Feature: domain Description: RVT_N Location: 1 088050-1 088293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1088338-1088986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 088338-1 088986 bp Feature: domain Description: GIIM Note: maturase Location: 1089040-1089271 bp Feature: domain Description: GIIM Note: maturase Location: 1 089040-1 089271 bp Feature: gene Location: 1089676-1090734 bp Feature: gene Location: 1090792-1096152 bp Feature: domain Description: ArdC Location: 1090999-1091590 bp Feature: domain Description: ArdC Location: 1 090999-1 091 590 bp Feature: domain Description: YodL Location: 1092817-1093108 bp Feature: domain Description: YodL Location: 1 09281 7-1 0931 08 bp Feature: domain Description: DUF3849 Location: 1093165-1093540 bp Feature: domain Description: DUF3849 Location: 1 0931 65-1 093540 bp Feature: domain Description: LPD18 Location: 1093579-1093825 bp Feature: domain Description: LPD1 8 Location: 1 093579-1 093825 bp Feature: domain Description: LPD16 Location: 1094335-1094563 bp Feature: domain Description: LPD1 6 Location: 1 094335-1 094563 bp Feature: domain Description: LPD16 Location: 1094683-1094890 bp Feature: domain Description: LPD1 6 Location: 1 094683-1 094890 bp Feature: gene Location: 1258036-1259943 bp Feature: domain Description: SpaA Location: 1258060-1258120 bp Feature: domain Description: SpaA Location: 1 258060-1 2581 20 bp Feature: domain Description: SpaA Location: 1258309-1258552 bp Feature: domain Description: SpaA Location: 1 258309-1 258552 bp Feature: domain Description: SpaA Location: 1258642-1258933 bp Feature: domain Description: SpaA Location: 1 258642-1 258933 bp Feature: domain Description: TQ Location: 1258990-1259353 bp Feature: domain Description: TQ Location: 1 258990-1 259353 bp Feature: domain Description: TQ Location: 1259377-1259743 bp Feature: domain Description: TQ Location: 1 259377-1 259743 bp Feature: domain Description: LPXTG_anchor Location: 1259833-1259929 bp Feature: domain Description: LPXTG_anchor Location: 1 259833-1 259929 bp Feature: gene Location: 1259979-1260215 bp Feature: gene Location: 1260238-1262100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1260556-1261294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 260556-1 261 294 bp Feature: gene Location: 1262295-1262438 bp Feature: gene Location: 1262805-1263812 bp Feature: domain Description: SpaA Location: 1263459-1263657 bp Feature: domain Description: SpaA Location: 1 263459-1 263657 bp Feature: gene Location: 2808217-2808360 bp Feature: gene Location: 2808453-2809637 bp Feature: domain Description: HTH_XRE Location: 2808483-2808627 bp Feature: domain Description: HTH_XRE Location: 2808483-2808627 bp Feature: domain Description: Rol_Rep_N Location: 2808660-2808924 bp Feature: domain Description: Rol_Rep_N Location: 2808660-2808924 bp Feature: domain Description: Rep_trans Location: 2808948-2809560 bp Feature: domain Description: Rep_trans Location: 2808948-2809560 bp Feature: gene Location: 2810517-2812427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810850-2811588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 0850-281 1 588 bp Feature: domain Description: HNHc Note: nucleases Location: 2812143-2812308 bp Feature: domain Description: HNHc Note: nucleases Location: 281 21 43-281 2308 bp Feature: gene Location: 2812615-2812755 bp Feature: gene Location: 2812768-2813271 bp Feature: domain Description: ArdA Location: 2812786-2813257 bp Feature: domain Description: ArdA Location: 281 2786-281 3257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), RVT_N (pfam13655), GIIM (pfam08388), ArdC (COG4227)
YodL (pfam14191), DUF3849 (pfam12960), LPD18 (pfam18832), LPD16 (pfam18830), SpaA (pfam17802), TQ (pfam18202), LPXTG_anchor (TIGR01167), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)
ArdA (pfam07275)

Seq: JAATHK010000002.1 Enterococcus faecium strain VRE32524, whole genome shotgun sequence (191362 bp)
Overview 1 RT 1: 23910-28994 bp Neighborhood of RT #1 [23910, 28999] VirB4 RVT-GII HNHc MazE Feature: gene Location: 23910-25604 bp Feature: domain Description: VirB4 Location: 24228-24912 bp Feature: domain Description: VirB4 Location: 2 42 2 8-2 4912 bp Feature: gene Location: 25872-26105 bp Feature: gene Location: 26292-28169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26607-27345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6607-2 7345 bp Feature: domain Description: HNHc Note: nucleases Location: 27903-28056 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7903-2 8056 bp Feature: gene Location: 28357-28677 bp Feature: gene Location: 28736-28999 bp Feature: domain Description: MazE Location: 28757-28994 bp Feature: domain Description: MazE Location: 2 8757-2 8994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), MazE (COG2336)

Seq: JAATHK010000003.1 Enterococcus faecium strain VRE32524, whole genome shotgun sequence (58625 bp)
Overview 1 RT 1: 38856-44136 bp Neighborhood of RT #1 [38856, 44828] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 38856-40061 bp Feature: domain Description: Glucosaminidase Location: 39132-39528 bp Feature: domain Description: Glucosaminidase Location: 3 913 2-3 9528 bp Feature: domain Description: Peptidase_M23 Location: 39705-39942 bp Feature: domain Description: Peptidase_M23 Location: 3 9705-3 9942 bp Feature: gene Location: 40061-40381 bp Feature: gene Location: 40569-42446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40884-41622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40884-41622 bp Feature: domain Description: HNHc Note: nucleases Location: 42180-42333 bp Feature: domain Description: HNHc Note: nucleases Location: 42180-423 3 3 bp Feature: gene Location: 42633-42866 bp Feature: gene Location: 43134-44828 bp Feature: domain Description: VirB4 Location: 43452-44136 bp Feature: domain Description: VirB4 Location: 43 452-4413 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: JAATHK010000004.1 Enterococcus faecium strain VRE32524, whole genome shotgun sequence (43127 bp)
Overview 1 RT 1: 31935-35698 bp Neighborhood of RT #1 [31935, 35698] Tra8 RVT-AbiP2 Rve Feature: gene Location: 31935-32096 bp Feature: gene Location: 32179-33132 bp Feature: domain Description: Tra8 Location: 32182-33109 bp Feature: domain Description: Tra8 Location: 32182-33109 bp Feature: gene Location: 33110-34585 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 33458-33923 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 334 58-33923 bp Feature: gene Location: 34780-35466 bp Feature: domain Description: Rve Location: 34789-35437 bp Feature: domain Description: Rve Location: 34 789-354 37 bp Feature: gene Location: 35522-35698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, Rve (COG3316)