myRT

myRT report for GCA_012952545.1_ASM1295254v1

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Seq: JAATHV010000001.1 Escherichia coli strain EC00690, whole genome shotgun sequence (5146255 bp)
Overview 1 RT 1: 57928-61869 bp 2 RT 2: 2014458-2017994 bp 3 RT 3: 2878857-2882415 bp 4 RT 4: 3670261-3674635 bp 5 RT 5: 3694864-3699264 bp Neighborhood of RT #1 [57928, 61869] RVT-Retrons Neighborhood of RT #2 [2014458, 2018059] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [2878857, 2882480] zinc_ribbon_11 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3670261, 3674640] Tra5 RVT-GII RVT-GII GIIM LacI PBP1_GntR Neighborhood of RT #5 [3694864, 3699380] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 57928-58167 bp Feature: gene Location: 58474-58650 bp Feature: gene Location: 58723-60495 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58882-59500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58882-59500 bp Feature: gene Location: 60517-60684 bp Feature: gene Location: 60730-61869 bp Feature: gene Location: 2014458-2014691 bp Feature: gene Location: 2014989-2015348 bp Feature: domain Description: PHA02517 Location: 2014992-2015346 bp Feature: domain Description: PHA0251 7 Location: 201 4992-201 5346 bp Feature: gene Location: 2015465-2016988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2015738-2016470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 5738-201 6470 bp Feature: domain Description: GIIM Note: maturase Location: 2016545-2016743 bp Feature: domain Description: GIIM Note: maturase Location: 201 6545-201 6743 bp Feature: gene Location: 2016942-2017367 bp Feature: gene Location: 2017580-2018059 bp Feature: domain Description: PHA02517 Location: 2017643-2017994 bp Feature: domain Description: PHA0251 7 Location: 201 7643-201 7994 bp Feature: gene Location: 2878857-2879357 bp Feature: domain Description: zinc_ribbon_11 Location: 2878974-2879292 bp Feature: domain Description: zinc_ribbon_1 1 Location: 2878974-2879292 bp Feature: gene Location: 2879323-2879769 bp Feature: domain Description: PHA02517 Location: 2879326-2879767 bp Feature: domain Description: PHA0251 7 Location: 2879326-2879767 bp Feature: gene Location: 2879886-2881409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2880159-2880891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28801 59-2880891 bp Feature: domain Description: GIIM Note: maturase Location: 2880966-2881164 bp Feature: domain Description: GIIM Note: maturase Location: 2880966-2881 1 64 bp Feature: gene Location: 2881363-2881788 bp Feature: gene Location: 2882001-2882480 bp Feature: domain Description: PHA02517 Location: 2882061-2882415 bp Feature: domain Description: PHA0251 7 Location: 2882061 -288241 5 bp Feature: gene Location: 3670261-3671082 bp Feature: domain Description: Tra5 Location: 3670417-3670945 bp Feature: domain Description: Tra5 Location: 367041 7-3670945 bp Feature: gene Location: 3671458-3671655 bp Feature: gene Location: 3671824-3672258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3672016-3672232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367201 6-3672232 bp Feature: gene Location: 3672231-3673082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3672234-3672642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3672234-3672642 bp Feature: domain Description: GIIM Note: maturase Location: 3672690-3672912 bp Feature: domain Description: GIIM Note: maturase Location: 3672690-367291 2 bp Feature: gene Location: 3673260-3673478 bp Feature: gene Location: 3673609-3674640 bp Feature: domain Description: LacI Location: 3673651-3673786 bp Feature: domain Description: LacI Location: 3673651 -3673786 bp Feature: domain Description: PBP1_GntR Location: 3673825-3674635 bp Feature: domain Description: PBP1 _GntR Location: 3673825-3674635 bp Feature: gene Location: 3694864-3695166 bp Feature: domain Description: InsE Location: 3694903-3695152 bp Feature: domain Description: InsE Location: 3694903-36951 52 bp Feature: gene Location: 3695222-3695647 bp Feature: domain Description: PHA02517 Location: 3695246-3695582 bp Feature: domain Description: PHA0251 7 Location: 3695246-3695582 bp Feature: gene Location: 3696239-3697762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696512-3697244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369651 2-3697244 bp Feature: domain Description: GIIM Note: maturase Location: 3697319-3697517 bp Feature: domain Description: GIIM Note: maturase Location: 369731 9-369751 7 bp Feature: gene Location: 3697957-3698085 bp Feature: domain Description: PHA02517 Location: 3697960-3698050 bp Feature: domain Description: PHA0251 7 Location: 3697960-3698050 bp Feature: gene Location: 3698304-3699380 bp Feature: domain Description: COG3547 Location: 3698343-3699264 bp Feature: domain Description: COG3547 Location: 3698343-3699264 bp Sorry, your browser does 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Associated domains:myRT RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), zinc_ribbon_11 (pfam11682), Tra5 (COG2801), LacI (pfam00356), PBP1_GntR (cd01575), InsE (COG2963), COG3547 (Transposase )

Seq: JAATHV010000002.1 Escherichia coli strain EC00690, whole genome shotgun sequence (106796 bp)
Overview 1 RT 1: 46393-50506 bp Neighborhood of RT #1 [46393, 50506] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 46393-46626 bp Feature: domain Description: DUF905 Location: 46423-46621 bp Feature: domain Description: DUF905 Location: 4642 3-4662 1 bp Feature: gene Location: 46682-47122 bp Feature: domain Description: PRK13732 Location: 46688-47120 bp Feature: domain Description: PRK13732 Location: 46688-4712 0 bp Feature: gene Location: 47317-49218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47584-48415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47584-48415 bp Feature: domain Description: Intron_maturas2 Location: 48529-48787 bp Feature: domain Description: Intron_maturas2 Location: 4852 9-48787 bp Feature: domain Description: HNHc Note: nucleases Location: 48961-49123 bp Feature: domain Description: HNHc Note: nucleases Location: 48961-4912 3 bp Feature: gene Location: 49935-50171 bp Feature: gene Location: 50240-50506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)