myRT

myRT report for GCA_012956265.1_ASM1295626v1

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Seq: JABCLS010001213.1 Vibrio parahaemolyticus strain Vb1034 BCHGPIMG_10, whole genome shotgun sequence (130107 bp)
Overview 1 RT 1: 34774-38462 bp Neighborhood of RT #1 [34774, 38563] DDE_Tnp_1 HTH_29 HTH_33 DDE_3 RVT-GII GIIM COG5421 Feature: gene Location: 34774-35241 bp Feature: domain Description: DDE_Tnp_1 Location: 34816-34981 bp Feature: domain Description: DDE_Tnp_1 Location: 3481 6-34981 bp Feature: gene Location: 35369-36223 bp Feature: domain Description: HTH_29 Location: 35465-35630 bp Feature: domain Description: HTH_29 Location: 35465-35630 bp Feature: domain Description: HTH_33 Location: 35663-35834 bp Feature: domain Description: HTH_33 Location: 35663-35834 bp Feature: domain Description: DDE_3 Location: 35876-36152 bp Feature: domain Description: DDE_3 Location: 35876-361 52 bp Feature: gene Location: 36256-37560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36544-37186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36544-371 86 bp Feature: domain Description: GIIM Note: maturase Location: 37258-37465 bp Feature: domain Description: GIIM Note: maturase Location: 37258-37465 bp Feature: gene Location: 37761-37970 bp Feature: gene Location: 38174-38563 bp Feature: domain Description: COG5421 Location: 38186-38462 bp Feature: domain Description: COG5421 Location: 381 86-38462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), COG5421 (Transposase )

Seq: JABCLS010001181.1 Vibrio parahaemolyticus strain Vb1034 BCHGPIMG_42, whole genome shotgun sequence (4594 bp)
Overview 1 RT 1: 222-4593 bp Neighborhood of RT #1 [222, 4593] HATPase RVT-UG28 COG5340 Feature: gene Location: 222-380 bp Feature: gene Location: 909-1934 bp Feature: domain Description: HATPase Location: 1374-1776 bp Feature: domain Description: HATPase Location: 1374-1776 bp Feature: gene Location: 2246-3748 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 2534-3173 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 2 534-3173 bp Feature: gene Location: 3825-4418 bp Feature: domain Description: COG5340 Location: 3954-4233 bp Feature: domain Description: COG5340 Location: 3954-42 33 bp Feature: gene Location: 4450-4593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase (cl00075), RVT-UG28, COG5340 (Transcriptional regulator, predicted component of viral defense system )

Seq: JABCLS010001178.1 Vibrio parahaemolyticus strain Vb1034 BCHGPIMG_45, whole genome shotgun sequence (3880 bp)
Overview 1 RT 1: 135-3591 bp Neighborhood of RT #1 [135, 3591] PHA02517 RVT-GII GIIM RVT-GII HTH_29 HTH_33 DDE_3 Feature: gene Location: 135-581 bp Feature: domain Description: PHA02517 Location: 144-552 bp Feature: domain Description: PHA02517 Location: 144-552 bp Feature: gene Location: 677-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 725-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 725-1145 bp Feature: domain Description: GIIM Note: maturase Location: 1238-1445 bp Feature: domain Description: GIIM Note: maturase Location: 123 8-1445 bp Feature: gene Location: 1829-2200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2102-2198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2102-2198 bp Feature: gene Location: 2274-3314 bp Feature: domain Description: HTH_29 Location: 2370-2538 bp Feature: domain Description: HTH_29 Location: 23 70-253 8 bp Feature: domain Description: HTH_33 Location: 2568-2736 bp Feature: domain Description: HTH_3 3 Location: 2568-273 6 bp Feature: domain Description: DDE_3 Location: 2775-3204 bp Feature: domain Description: DDE_3 Location: 2775-3 204 bp Feature: gene Location: 3394-3591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)