myRT

myRT report for GCA_012956805.1_ASM1295680v1

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Seq: JABBZM010000085.1 Ralstonia insidiosa strain 5047 NODE_103_length_439_cov_0.791667, whole genome shotgun sequence (439 bp)
Overview 1 RT 1: 3-378 bp Neighborhood of RT #1 [3, 389] RT_nLTR_like RVT-CRISPR-like Feature: gene Location: 3-173 bp Feature: domain Description: RT_nLTR_like Location: 6-171 bp Feature: domain Description: RT_nLTR_like Location: 6-1 71 bp Feature: gene Location: 207-389 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 249-378 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 249-378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_nLTR_like (cd01650), RVT-CRISPR

Seq: JABBZM010000002.1 Ralstonia insidiosa strain 5047 NODE_2_length_331448_cov_21.612041, whole genome shotgun sequence (331448 bp)
Overview 1 RT 1: 139773-143170 bp 2 RT 2: 270567-274663 bp Neighborhood of RT #1 [139773, 143170] Avd_like RVT-DGRs HNH_3 Neighborhood of RT #2 [270567, 274803] DUF1566 Avd_like RVT-DGRs Dam Feature: gene Location: 139773-140246 bp Feature: gene Location: 140261-140635 bp Feature: domain Description: Avd_like Location: 140288-140594 bp Feature: domain Description: Avd_like Location: 1402 88-140594 bp Feature: gene Location: 140682-142040 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141060-141747 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141060-141747 bp Feature: gene Location: 142033-142710 bp Feature: domain Description: HNH_3 Location: 142453-142534 bp Feature: domain Description: HNH_3 Location: 142 453-142 534 bp Feature: gene Location: 142817-143170 bp Feature: gene Location: 270567-271028 bp Feature: domain Description: DUF1566 Location: 270825-271005 bp Feature: domain Description: DUF1566 Location: 2 7082 5-2 71005 bp Feature: gene Location: 271043-271420 bp Feature: domain Description: Avd_like Location: 271070-271373 bp Feature: domain Description: Avd_like Location: 2 71070-2 71373 bp Feature: gene Location: 271413-272786 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 271845-272532 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 71845-2 72 532 bp Feature: gene Location: 272780-274291 bp Feature: gene Location: 274288-274803 bp Feature: domain Description: Dam Location: 274321-274663 bp Feature: domain Description: Dam Location: 2 7432 1-2 74663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, HNH_3 (pfam13392), DUF1566 (pfam07603), Dam (pfam05869)

Seq: JABBZM010000003.1 Ralstonia insidiosa strain 5047 NODE_3_length_322448_cov_21.920976, whole genome shotgun sequence (322448 bp)
Overview 1 RT 1: 198912-203967 bp Neighborhood of RT #1 [198912, 203990] Resolvase Recombinase Zn_ribbon_recom RVT-DGRs Avd_like DUF1566 Feature: gene Location: 198912-201092 bp Feature: domain Description: Resolvase Location: 198924-199362 bp Feature: domain Description: Resolvase Location: 198924-1993 62 bp Feature: domain Description: Recombinase Location: 199437-199779 bp Feature: domain Description: Recombinase Location: 19943 7-199779 bp Feature: domain Description: Zn_ribbon_recom Location: 199830-199989 bp Feature: domain Description: Zn_ribbon_recom Location: 19983 0-199989 bp Feature: gene Location: 201259-201657 bp Feature: gene Location: 201780-203093 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 202158-202845 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 202158-202845 bp Feature: gene Location: 203140-203514 bp Feature: domain Description: Avd_like Location: 203167-203473 bp Feature: domain Description: Avd_like Location: 203 167-203 473 bp Feature: gene Location: 203529-203990 bp Feature: domain Description: DUF1566 Location: 203832-203967 bp Feature: domain Description: DUF1566 Location: 203 83 2-203 967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)