myRT

myRT report for GCA_012959465.1_ASM1295946v1

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Seq: DUDC01000032.1 TPA_asm: Planctomycetaceae bacterium isolate UWMA-0346 NODE_1272_length_42439_cov_0.113344, whole genome shotgun sequence (42439 bp)
Overview 1 RT 1: 31360-36343 bp Neighborhood of RT #1 [31360, 36343] RVT-Retrons SHD1 KOG0266 Feature: gene Location: 31360-31572 bp Feature: gene Location: 31587-32282 bp Feature: gene Location: 32708-33772 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32906-33530 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32906-33530 bp Feature: gene Location: 33904-34611 bp Feature: domain Description: SHD1 Location: 34054-34219 bp Feature: domain Description: SHD1 Location: 34054-3421 9 bp Feature: domain Description: KOG0266 Location: 34282-34420 bp Feature: domain Description: KOG0266 Location: 34282-34420 bp Feature: gene Location: 34685-36343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SHD1 (pfam03983), KOG0266 (KOG0266, WD40 repeat-containing protein )

Seq: DUDC01000118.1 TPA_asm: Planctomycetaceae bacterium isolate UWMA-0346 NODE_24292_length_4513_cov_0.088355, whole genome shotgun sequence (4513 bp)
Overview 1 RT 1: 1-2548 bp Neighborhood of RT #1 [1, 3900] RVT-UNC Feature: gene Location: 1-168 bp Feature: gene Location: 239-421 bp Feature: gene Location: 544-3900 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2032-2548 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 032 -2 548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27/RVT-DGRs/RVT-GII(RVT-UNC)

Seq: DUDC01000137.1 TPA_asm: Planctomycetaceae bacterium isolate UWMA-0346 NODE_28183_length_4040_cov_0.059630, whole genome shotgun sequence (4040 bp)
Overview 1 RT 1: 616-4003 bp Neighborhood of RT #1 [616, 4038] RVT-UNC RNase_HI_like Feature: gene Location: 616-4038 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1732-2344 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 173 2-23 44 bp Feature: domain Description: RNase_HI_like Location: 3604-4003 bp Feature: domain Description: RNase_HI_like Location: 3 604-4003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA/RVT-DGRs/RVT-GII/RVT-CRISPR(RVT-UNC), RNase_HI_like (cd09279)

Seq: DUDC01000183.1 TPA_asm: Planctomycetaceae bacterium isolate UWMA-0346 NODE_36417_length_3325_cov_0.159020, whole genome shotgun sequence (3325 bp)
Overview 1 RT 1: 119-3139 bp Neighborhood of RT #1 [119, 3162] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 119-445 bp Feature: domain Description: InsE Location: 167-437 bp Feature: domain Description: InsE Location: 167-4 37 bp Feature: gene Location: 442-933 bp Feature: domain Description: PHA02517 Location: 508-874 bp Feature: domain Description: PHA02517 Location: 508-874 bp Feature: gene Location: 1363-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1567-2224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1567-2224 bp Feature: domain Description: GIIM Note: maturase Location: 2305-2524 bp Feature: domain Description: GIIM Note: maturase Location: 2305-2524 bp Feature: gene Location: 2665-3162 bp Feature: domain Description: PHA02517 Location: 2695-3139 bp Feature: domain Description: PHA02517 Location: 2695-3139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: DUDC01000189.1 TPA_asm: Planctomycetaceae bacterium isolate UWMA-0346 NODE_37421_length_3259_cov_0.135443, whole genome shotgun sequence (3259 bp)
Overview 1 RT 1: 1-2934 bp Neighborhood of RT #1 [1, 3257] L1-EN RVT-UNC Feature: gene Location: 1-402 bp Feature: gene Location: 342-3257 bp Feature: domain Description: L1-EN Location: 870-1188 bp Feature: domain Description: L1-EN Location: 870-1188 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2604-2934 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2604-2934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-CRISPR/RVT-GII(RVT-UNC)