myRT

myRT report for GCA_012960135.1_ASM1296013v1

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Seq: DUBW01000014.1 TPA_asm: Methyloprofundus sp. isolate UWMA-0312 NODE_14988_length_6577_cov_0.780333, whole genome shotgun sequence (6577 bp)
Overview 1 RT 1: 3353-6037 bp Neighborhood of RT #1 [3353, 6037] COG3360 RVT-UNC Feature: gene Location: 3353-3613 bp Feature: gene Location: 3795-4004 bp Feature: domain Description: COG3360 Location: 3798-3996 bp Feature: domain Description: COG3360 Location: 3798-3996 bp Feature: gene Location: 4069-4248 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4081-4240 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4081 -4240 bp Feature: gene Location: 4460-6037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3360 (Flavin-binding protein dodecin ), RVT-UG4/RVT-CRISPR/RVT-DGRs/RVT-UG18(RVT-UNC)

Seq: DUBW01000031.1 TPA_asm: Methyloprofundus sp. isolate UWMA-0312 NODE_2423_length_27120_cov_0.920284, whole genome shotgun sequence (27120 bp)
Overview 1 RT 1: 3-3337 bp 2 RT 2: 24964-27116 bp Neighborhood of RT #1 [3, 3390] RVT-UG4 PRK09045 salvage_mtnA Neighborhood of RT #2 [24964, 27118] YncB RVT-UG4 Feature: gene Location: 3-188 bp Feature: gene Location: 431-865 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 482-629 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 482 -62 9 bp Feature: gene Location: 979-2283 bp Feature: domain Description: PRK09045 Location: 985-2269 bp Feature: domain Description: PRK09045 Location: 985-2 2 69 bp Feature: gene Location: 2332-3390 bp Feature: domain Description: salvage_mtnA Location: 2374-3337 bp Feature: domain Description: salvage_mtnA Location: 2 374-3337 bp Feature: gene Location: 24964-25659 bp Feature: gene Location: 25898-26329 bp Feature: domain Description: YncB Location: 25976-26291 bp Feature: domain Description: YncB Location: 2 5976-2 62 91 bp Feature: gene Location: 26357-27118 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 26774-27116 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 6774-2 7116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK09045 (TRZ/ATZ family hydrolase), salvage_mtnA (TIGR00512), YncB (COG1525)

Seq: DUBW01000086.1 TPA_asm: Methyloprofundus sp. isolate UWMA-0312 NODE_8726_length_10085_cov_0.739635, whole genome shotgun sequence (10085 bp)
Overview 1 RT 1: 142-4657 bp Neighborhood of RT #1 [142, 4734] RVT-GII GIIM YicC gmk Feature: gene Location: 142-999 bp Feature: gene Location: 1001-1285 bp Feature: gene Location: 1384-2634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1585-2197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1585-2197 bp Feature: domain Description: GIIM Note: maturase Location: 2242-2452 bp Feature: domain Description: GIIM Note: maturase Location: 2242-2452 bp Feature: gene Location: 3862-4044 bp Feature: domain Description: YicC Location: 3871-4042 bp Feature: domain Description: YicC Location: 3 871-4042 bp Feature: gene Location: 4054-4734 bp Feature: domain Description: gmk Location: 4060-4657 bp Feature: domain Description: gmk Location: 4060-4657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YicC (COG1561), gmk (PRK14738)