myRT

myRT report for GCA_012961805.1_ASM1296180v1

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Seq: DTYQ01000258.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_1446927, whole genome shotgun sequence (4380 bp)
Overview 1 RT 1: 1-4361 bp Neighborhood of RT #1 [1, 4361] RVT-UG4 KOG1306 Calx-beta LbH_eIF2B_gamma_C LbH_G1P_AT_C_like Feature: gene Location: 1-4050 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 28-367 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 28-367 bp Feature: domain Description: KOG1306 Location: 1795-2137 bp Feature: domain Description: KOG1 306 Location: 1 795-21 37 bp Feature: domain Description: Calx-beta Location: 2302-2566 bp Feature: domain Description: Calx-beta Location: 2302-2566 bp Feature: domain Description: LbH_eIF2B_gamma_C Location: 3244-3346 bp Feature: domain Description: LbH_eIF2B_gamma_C Location: 3244-3346 bp Feature: domain Description: LbH_G1P_AT_C_like Location: 3427-3532 bp Feature: domain Description: LbH_G1 P_AT_C_like Location: 3427-3532 bp Feature: gene Location: 4215-4361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, KOG1306 (KOG1306, Ca2+/Na+ exchanger NCX1 and related proteins ), Calx-beta (pfam03160), LbH_eIF2B_gamma_C (cd04652), LbH_G1P_AT_C_like (cd03356)

Seq: DTYQ01000358.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_1589837, whole genome shotgun sequence (5030 bp)
Overview 1 RT 1: 3176-4707 bp Neighborhood of RT #1 [3176, 4910] RVT-UG4 Feature: gene Location: 3176-3364 bp Feature: gene Location: 3379-3792 bp Feature: gene Location: 3789-4910 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4272-4707 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 42 72 -4707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: DTYQ01000631.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_2056626, whole genome shotgun sequence (1791 bp)
Overview 1 RT 1: 31-1687 bp Neighborhood of RT #1 [31, 1752] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 31-1752 bp Feature: domain Description: RVT_N Location: 79-325 bp Feature: domain Description: RVT_N Location: 79-3 25 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-1027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 67-1027 bp Feature: domain Description: GIIM Note: maturase Location: 1099-1333 bp Feature: domain Description: GIIM Note: maturase Location: 1099-13 3 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1528-1687 bp Feature: domain Description: HNHc Note: nucleases Location: 1528-1687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: DTYQ01000679.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_2126485, whole genome shotgun sequence (3212 bp)
Overview 1 RT 1: 1-2974 bp Neighborhood of RT #1 [1, 3108] Cas1_I-II-III RVT-CRISPR Cas2_I_II_III Cas2_I_II_III Feature: gene Location: 1-156 bp Feature: gene Location: 289-1236 bp Feature: domain Description: Cas1_I-II-III Location: 301-1132 bp Feature: domain Description: Cas1_I-II-III Location: 301-1132 bp Feature: gene Location: 1224-2300 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1431-2001 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 14 31-2001 bp Feature: gene Location: 2440-3108 bp Feature: domain Description: Cas2_I_II_III Location: 2482-2683 bp Feature: domain Description: Cas2_I_II_III Location: 24 82-2683 bp Feature: domain Description: Cas2_I_II_III Location: 2785-2974 bp Feature: domain Description: Cas2_I_II_III Location: 2785-2974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas1_I-II-III (cl00656), RVT-CRISPR, Cas2_I_II_III (cl11442)

Seq: DTYQ01000693.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_2143046, whole genome shotgun sequence (2630 bp)
Overview 1 RT 1: 1-2421 bp Neighborhood of RT #1 [1, 2421] RVT_N RVT-GII GIIM Feature: gene Location: 1-1350 bp Feature: domain Description: RVT_N Location: 67-313 bp Feature: domain Description: RVT_N Location: 67-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 5 -1015 bp Feature: domain Description: GIIM Note: maturase Location: 1093-1321 bp Feature: domain Description: GIIM Note: maturase Location: 1093-1321 bp Feature: gene Location: 1638-1799 bp Feature: gene Location: 1912-2421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DTYQ01000989.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_2704233, whole genome shotgun sequence (2374 bp)
Overview 1 RT 1: 78-2223 bp Neighborhood of RT #1 [78, 2264] Cas2_I_II_III Cas2_I_II_III RVT-CRISPR cas1_DVULG Feature: gene Location: 78-728 bp Feature: domain Description: Cas2_I_II_III Location: 123-321 bp Feature: domain Description: Cas2_I_II_III Location: 123-321 bp Feature: domain Description: Cas2_I_II_III Location: 417-606 bp Feature: domain Description: Cas2_I_II_III Location: 417-6 06 bp Feature: gene Location: 928-2022 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1141-1735 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1141-1735 bp Feature: gene Location: 2010-2264 bp Feature: domain Description: cas1_DVULG Location: 2025-2223 bp Feature: domain Description: cas1_DVULG Location: 2025-2223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_DVULG (TIGR03640)

Seq: DTYQ01001044.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_2793179, whole genome shotgun sequence (2292 bp)
Overview 1 RT 1: 64-1720 bp Neighborhood of RT #1 [64, 1785] RVT_N RVT-GII GIIM HNH Feature: gene Location: 64-1785 bp Feature: domain Description: RVT_N Location: 112-358 bp Feature: domain Description: RVT_N Location: 112-358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400-1060 bp Feature: domain Description: GIIM Note: maturase Location: 1132-1366 bp Feature: domain Description: GIIM Note: maturase Location: 1132-1366 bp Feature: domain Description: HNH Note: nucleases Location: 1588-1720 bp Feature: domain Description: HNH Note: nucleases Location: 1588-17 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: DTYQ01001105.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_2906451, whole genome shotgun sequence (7919 bp)
Overview 1 RT 1: 3658-7759 bp Neighborhood of RT #1 [3658, 7764] RMtype1_S_Vch69ORF1407P_TRD2-CR2_like SpoVK RVT-AbiP2 COG2865 Feature: gene Location: 3658-3837 bp Feature: domain Description: RMtype1_S_Vch69ORF1407P_TRD2-CR2_like Location: 3664-3811 bp Feature: domain Description: RMtype1_S_Vch69ORF1407P_TRD2-CR2_like Location: 3664-38 11 bp Feature: gene Location: 3853-4851 bp Feature: domain Description: SpoVK Location: 4156-4822 bp Feature: domain Description: SpoVK Location: 4156-48 22 bp Feature: gene Location: 4884-6401 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5340-5796 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5340-5796 bp Feature: gene Location: 6523-7764 bp Feature: domain Description: COG2865 Location: 6526-7759 bp Feature: domain Description: COG28 65 Location: 6526-7759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_Vch69ORF1407P_TRD2-CR2_like (cd17501), SpoVK (COG0464), RVT-AbiP2, COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: DTYQ01001280.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_3226493, whole genome shotgun sequence (1856 bp)
Overview 1 RT 1: 55-1738 bp Neighborhood of RT #1 [55, 1776] RVT_N RVT-GII GIIM McrA Feature: gene Location: 55-1776 bp Feature: domain Description: RVT_N Location: 103-349 bp Feature: domain Description: RVT_N Location: 103-349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391-1051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39 1-1051 bp Feature: domain Description: GIIM Note: maturase Location: 1123-1357 bp Feature: domain Description: GIIM Note: maturase Location: 1123-1357 bp Feature: domain Description: McrA Location: 1432-1738 bp Feature: domain Description: McrA Location: 1432-1738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: DTYQ01001459.1 TPA_asm: Thiotrichaceae bacterium isolate UWMA-0225 k99_700341, whole genome shotgun sequence (1847 bp)
Overview 1 RT 1: 129-1781 bp Neighborhood of RT #1 [129, 1846] KOG0145 RVT-GII GIIM HNH Feature: gene Location: 129-371 bp Feature: gene Location: 399-530 bp Feature: domain Description: KOG0145 Location: 408-504 bp Feature: domain Description: KOG0145 Location: 408-504 bp Feature: gene Location: 668-1846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-1121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-1121 bp Feature: domain Description: GIIM Note: maturase Location: 1193-1427 bp Feature: domain Description: GIIM Note: maturase Location: 1193-1427 bp Feature: domain Description: HNH Note: nucleases Location: 1649-1781 bp Feature: domain Description: HNH Note: nucleases Location: 1649-1781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0145 (KOG0145, RNA-binding protein ELAV/HU (RRM superfamily) ), RVT-GII, GIIM (pfam08388), HNH (pfam01844)