myRT

myRT report for GCA_012976295.1_ASM1297629v1

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Seq: JABDSI010000128.1 Bacteroides vulgatus strain VPI-BV8526 scaffold12.1-refined, whole genome shotgun sequence (92845 bp)
Overview 1 RT 1: 423-3982 bp Neighborhood of RT #1 [423, 3999] RVT-GII Intron_maturas2 INTN1_C_like AraC Feature: gene Location: 423-563 bp Feature: gene Location: 569-2386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 833-1655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 833-1 655 bp Feature: domain Description: Intron_maturas2 Location: 1730-2036 bp Feature: domain Description: Intron_maturas2 Location: 1 730-2036 bp Feature: gene Location: 2379-2582 bp Feature: domain Description: INTN1_C_like Location: 2499-2568 bp Feature: domain Description: INTN1 _C_like Location: 2499-2568 bp Feature: gene Location: 3097-3999 bp Feature: domain Description: AraC Location: 3667-3982 bp Feature: domain Description: AraC Location: 3667-3982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), AraC (COG2207), RVT-GII, Intron_maturas2 (pfam01348)

Seq: JABDSI010000126.1 Bacteroides vulgatus strain VPI-BV8526 scaffold14.1-refined, whole genome shotgun sequence (87292 bp)
Overview 1 RT 1: 633-4853 bp Neighborhood of RT #1 [633, 4873] RVT_N RVT-GII YkfC HTH_ARAC Feature: gene Location: 633-2369 bp Feature: RT Description: RVT_N Location: 756-999 bp Feature: RT Description: RVT_N Location: 756-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1692 bp Feature: domain Description: YkfC Location: 1902-1992 bp Feature: domain Description: YkfC Location: 1902 -1992 bp Feature: gene Location: 2320-3573 bp Feature: gene Location: 3716-4873 bp Feature: domain Description: HTH_ARAC Location: 4607-4853 bp Feature: domain Description: HTH_ARAC Location: 4607-4853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: JABDSI010000124.1 Bacteroides vulgatus strain VPI-BV8526 scaffold16.1-refined, whole genome shotgun sequence (86630 bp)
Overview 1 RT 1: 6467-11100 bp Neighborhood of RT #1 [6467, 11100] Dam RVT-DGRs Feature: gene Location: 6467-7309 bp Feature: domain Description: Dam Location: 6470-7238 bp Feature: domain Description: Dam Location: 6470-723 8 bp Feature: gene Location: 7496-7906 bp Feature: gene Location: 7920-9245 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8112-8703 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8112-8703 bp Feature: gene Location: 9217-9570 bp Feature: gene Location: 9784-11100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT-DGRs

Seq: JABDSI010000137.1 Bacteroides vulgatus strain VPI-BV8526 scaffold2.1-refined, whole genome shotgun sequence (224961 bp)
Overview 1 RT 1: 165807-171777 bp Neighborhood of RT #1 [165807, 171777] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 165807-167837 bp Feature: domain Description: Bac_Flav_CT_G Location: 165810-167832 bp Feature: domain Description: Bac_Flav_CT_G Location: 165810-167832 bp Feature: gene Location: 168031-168237 bp Feature: gene Location: 168435-170117 bp Feature: RT Description: RVT_N Location: 168516-168759 bp Feature: RT Description: RVT_N Location: 168516-168759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168804-169452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168804 -1694 52 bp Feature: domain Description: GIIM Note: maturase Location: 169503-169737 bp Feature: domain Description: GIIM Note: maturase Location: 169503-169737 bp Feature: gene Location: 170120-170728 bp Feature: domain Description: Bac_Flav_CT_G Location: 170237-170696 bp Feature: domain Description: Bac_Flav_CT_G Location: 170237-170696 bp Feature: gene Location: 170752-171777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABDSI010000131.1 Bacteroides vulgatus strain VPI-BV8526 scaffold8.1-refined, whole genome shotgun sequence (111122 bp)
Overview 1 RT 1: 94350-96366 bp Neighborhood of RT #1 [94350, 96366] RVT-GII HTH_28 Feature: gene Location: 94350-94712 bp Feature: gene Location: 94716-94925 bp Feature: gene Location: 94955-95152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94958-95150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9495 8-95 15 0 bp Feature: gene Location: 95273-95563 bp Feature: domain Description: HTH_28 Location: 95297-95444 bp Feature: domain Description: HTH_28 Location: 95 297-95 444 bp Feature: gene Location: 95992-96366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: JABDSI010000065.1 Bacteroides vulgatus strain VPI-BV8526 scaffold87.1-refined, whole genome shotgun sequence (18985 bp)
Overview 1 RT 1: 1343-6878 bp Neighborhood of RT #1 [1343, 6886] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_N Bac_Flav_CT_M Feature: gene Location: 1343-1918 bp Feature: domain Description: TraO Location: 1418-1913 bp Feature: domain Description: TraO Location: 1418-1913 bp Feature: gene Location: 1921-2646 bp Feature: domain Description: Bac_Flav_CT_N Location: 2065-2626 bp Feature: domain Description: Bac_Flav_CT_N Location: 206 5-26 26 bp Feature: gene Location: 2618-4429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2882-3704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2882-3704 bp Feature: domain Description: Intron_maturas2 Location: 3773-4082 bp Feature: domain Description: Intron_maturas2 Location: 3773-4082 bp Feature: gene Location: 4970-5467 bp Feature: domain Description: Bac_Flav_CT_N Location: 4973-5048 bp Feature: domain Description: Bac_Flav_CT_N Location: 4973-5048 bp Feature: domain Description: Bac_Flav_CT_N Location: 5183-5447 bp Feature: domain Description: Bac_Flav_CT_N Location: 5183-5447 bp Feature: gene Location: 5537-6886 bp Feature: domain Description: Bac_Flav_CT_M Location: 5636-6878 bp Feature: domain Description: Bac_Flav_CT_M Location: 56 36 -6 878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), Bac_Flav_CT_M (TIGR03779)

Seq: JABDSI010000130.1 Bacteroides vulgatus strain VPI-BV8526 scaffold9.1-refined, whole genome shotgun sequence (110086 bp)
Overview 1 RT 1: 105833-109907 bp Neighborhood of RT #1 [105833, 109907] RibD_C TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 105833-106327 bp Feature: domain Description: RibD_C Location: 106139-106301 bp Feature: domain Description: RibD_C Location: 106139-106301 bp Feature: gene Location: 106549-107784 bp Feature: domain Description: TraG-D_C Location: 107128-107464 bp Feature: domain Description: TraG-D_C Location: 107 128-107 464 bp Feature: gene Location: 107789-109441 bp Feature: RT Description: RVT_N Location: 107843-108086 bp Feature: RT Description: RVT_N Location: 107 843-108086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108131-108779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108131-1087 7 9 bp Feature: domain Description: GIIM Note: maturase Location: 108833-109064 bp Feature: domain Description: GIIM Note: maturase Location: 108833-109064 bp Feature: gene Location: 109523-109696 bp Feature: gene Location: 109758-109907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RibD_C (pfam01872), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)