myRT

myRT report for GCA_012976765.1_ASM1297676v1

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Seq: JABDSG010000105.1 Bacteroides vulgatus strain VPI-4496.2 scaffold15.1, whole genome shotgun sequence (93564 bp)
Overview 1 RT 1: 11123-18823 bp Neighborhood of RT #1 [11123, 18823] YWFCY T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 11123-12133 bp Feature: domain Description: YWFCY Location: 11129-11306 bp Feature: domain Description: YWFCY Location: 1 1 1 29-1 1 306 bp Feature: domain Description: T4SS-DNA_transf Location: 11597-12104 bp Feature: domain Description: T4SS-DNA_transf Location: 1 1 597-1 21 04 bp Feature: gene Location: 12161-12676 bp Feature: gene Location: 12678-14483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12942-13764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2942-1 3764 bp Feature: domain Description: Intron_maturas2 Location: 13842-14172 bp Feature: domain Description: Intron_maturas2 Location: 1 3842-1 41 72 bp Feature: domain Description: HNHc Note: nucleases Location: 14316-14460 bp Feature: domain Description: HNHc Note: nucleases Location: 1 431 6-1 4460 bp Feature: gene Location: 14470-14775 bp Feature: gene Location: 15069-15296 bp Feature: gene Location: 15302-17119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15569-16391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5569-1 6391 bp Feature: domain Description: Intron_maturas2 Location: 16535-16769 bp Feature: domain Description: Intron_maturas2 Location: 1 6535-1 6769 bp Feature: domain Description: HNHc Note: nucleases Location: 16940-17090 bp Feature: domain Description: HNHc Note: nucleases Location: 1 6940-1 7090 bp Feature: gene Location: 17083-18114 bp Feature: domain Description: TraG-D_C Location: 17461-17794 bp Feature: domain Description: TraG-D_C Location: 1 7461 -1 7794 bp Feature: gene Location: 18410-18823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696)

Seq: JABDSG010000119.1 Bacteroides vulgatus strain VPI-4496.2 scaffold2.1, whole genome shotgun sequence (242231 bp)
Overview 1 RT 1: 55866-59629 bp Neighborhood of RT #1 [55866, 59700] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 55866-57200 bp Feature: gene Location: 57244-57588 bp Feature: gene Location: 57845-58879 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58055-58667 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58055-58667 bp Feature: gene Location: 58857-59228 bp Feature: gene Location: 59230-59700 bp Feature: domain Description: Phage_holin_4_1 Location: 59317-59629 bp Feature: domain Description: Phage_holin_4_1 Location: 59317-5962 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: JABDSG010000077.1 Bacteroides vulgatus strain VPI-4496.2 scaffold44.1, whole genome shotgun sequence (27324 bp)
Overview 1 RT 1: 14293-17794 bp Neighborhood of RT #1 [14293, 18459] RVT-DGRs Phage_Mu_F Feature: gene Location: 14293-14535 bp Feature: gene Location: 14725-15210 bp Feature: gene Location: 15210-16511 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15423-16017 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15423 -16017 bp Feature: gene Location: 16890-17123 bp Feature: gene Location: 17233-18459 bp Feature: domain Description: Phage_Mu_F Location: 17518-17794 bp Feature: domain Description: Phage_Mu_F Location: 17518-17794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233)

Seq: JABDSG010000082.1 Bacteroides vulgatus strain VPI-4496.2 scaffold48.1, whole genome shotgun sequence (38468 bp)
Overview 1 RT 1: 21492-23837 bp Neighborhood of RT #1 [21492, 23837] RVT-DGRs Feature: gene Location: 21492-21941 bp Feature: gene Location: 21974-22300 bp Feature: gene Location: 22332-23228 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22545-23100 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2254 5-23100 bp Feature: gene Location: 23325-23582 bp Feature: gene Location: 23604-23837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JABDSG010000116.1 Bacteroides vulgatus strain VPI-4496.2 scaffold5.1, whole genome shotgun sequence (161316 bp)
Overview 1 RT 1: 157663-160894 bp Neighborhood of RT #1 [157663, 160894] Spc7 RVT_N RVT-GII GIIM Feature: gene Location: 157663-157824 bp Feature: gene Location: 157911-159224 bp Feature: domain Description: Spc7 Location: 158835-159102 bp Feature: domain Description: Spc7 Location: 15 8835 -15 9102 bp Feature: gene Location: 159178-160635 bp Feature: RT Description: RVT_N Location: 159223-159424 bp Feature: RT Description: RVT_N Location: 15 9223-15 9424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159469-160117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 9469-160117 bp Feature: domain Description: GIIM Note: maturase Location: 160171-160315 bp Feature: domain Description: GIIM Note: maturase Location: 160171-160315 bp Feature: gene Location: 160745-160894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spc7 (smart00787), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABDSG010000118.1 Bacteroides vulgatus strain VPI-4496.2 scaffold7.1, whole genome shotgun sequence (210228 bp)
Overview 1 RT 1: 178548-183842 bp Neighborhood of RT #1 [178548, 183842] KOG1000 RVT-GII Intron_maturas2 Feature: gene Location: 178548-180242 bp Feature: domain Description: KOG1000 Location: 178656-180207 bp Feature: domain Description: KOG1000 Location: 1786 56 -180207 bp Feature: gene Location: 180559-180732 bp Feature: gene Location: 180862-182670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181126-181948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181126 -181948 bp Feature: domain Description: Intron_maturas2 Location: 182044-182329 bp Feature: domain Description: Intron_maturas2 Location: 182044-182329 bp Feature: gene Location: 182660-182866 bp Feature: gene Location: 182925-183842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348)