myRT

myRT report for GCA_012977905.1_ASM1297790v1

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Seq: JABBFB010000364.1 Escherichia coli strain C05 Sample_5C_R2_contig_436_consensus, whole genome shotgun sequence (347 bp)
Overview 1 RT 1: 42-333 bp Neighborhood of RT #1 [42, 344] RVT-GII Feature: gene Location: 42-344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243-333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243-333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABBFB010000042.1 Escherichia coli strain C05 Sample_5C_R2_contig_44_consensus, whole genome shotgun sequence (12724 bp)
Overview 1 RT 1: 5729-8754 bp Neighborhood of RT #1 [5729, 8801] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 5729-6094 bp Feature: gene Location: 6125-6352 bp Feature: domain Description: PHA02517 Location: 6128-6350 bp Feature: domain Description: PHA02 517 Location: 612 8-6350 bp Feature: gene Location: 6475-7998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6748-7480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6748-7480 bp Feature: domain Description: GIIM Note: maturase Location: 7558-7753 bp Feature: domain Description: GIIM Note: maturase Location: 7558-7753 bp Feature: gene Location: 8022-8324 bp Feature: gene Location: 8607-8801 bp Feature: domain Description: PHA02517 Location: 8613-8754 bp Feature: domain Description: PHA02 517 Location: 8613-8754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JABBFB010000635.1 Escherichia coli strain C05 Sample_5C_R2_contig_772_consensus, whole genome shotgun sequence (279 bp)
Overview 1 RT 1: 2-272 bp Neighborhood of RT #1 [2, 277] RVT-GII Feature: gene Location: 2-277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABBFB010000009.1 Escherichia coli strain C05 Sample_5C_R2_contig_9_consensus, whole genome shotgun sequence (147555 bp)
Overview 1 RT 1: 90948-98328 bp Neighborhood of RT #1 [90948, 98432] INT_Rci_Hp1_C INT_P4_C RVT-UG3 RVT-UG8 XerC Feature: gene Location: 90948-92414 bp Feature: domain Description: INT_Rci_Hp1_C Location: 91326-91575 bp Feature: domain Description: INT_Rci_Hp1_C Location: 91326-91575 bp Feature: domain Description: INT_P4_C Location: 91752-92277 bp Feature: domain Description: INT_P4 _C Location: 91752-92277 bp Feature: gene Location: 92468-93025 bp Feature: gene Location: 93246-94517 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 93528-94023 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 93528-94 023 bp Feature: gene Location: 94514-96523 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 95087-95531 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 95087-95531 bp Feature: gene Location: 96581-96781 bp Feature: gene Location: 97140-98432 bp Feature: domain Description: XerC Location: 97323-98328 bp Feature: domain Description: XerC Location: 97323-98328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG3, RVT-UG8, XerC (COG4973)