myRT

myRT report for GCA_012977915.1_ASM1297791v1

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Seq: JABBFC010000015.1 Escherichia coli strain C20 Sample_20C_R1_contig_15_consensus, whole genome shotgun sequence (83700 bp)
Overview 1 RT 1: 43904-47786 bp Neighborhood of RT #1 [43904, 47791] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 43904-44620 bp Feature: domain Description: rph Location: 43907-44615 bp Feature: domain Description: rph Location: 43907-4461 5 bp Feature: gene Location: 44671-45327 bp Feature: domain Description: pyrE Location: 44689-45322 bp Feature: domain Description: pyrE Location: 44689-45322 bp Feature: gene Location: 45625-46584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45760-46309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45760-46309 bp Feature: gene Location: 46630-47226 bp Feature: domain Description: slmA Location: 46636-47212 bp Feature: domain Description: slmA Location: 46636-4721 2 bp Feature: gene Location: 47333-47791 bp Feature: domain Description: dut Location: 47339-47786 bp Feature: domain Description: dut Location: 47339-47786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JABBFC010000090.1 Escherichia coli strain C20 Sample_20C_R1_contig_91_consensus, whole genome shotgun sequence (2221 bp)
Overview 1 RT 1: 67-2219 bp Neighborhood of RT #1 [67, 2219] RVT-GII GIIM Feature: gene Location: 67-1413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-895 bp Feature: domain Description: GIIM Note: maturase Location: 970-1168 bp Feature: domain Description: GIIM Note: maturase Location: 970-1168 bp Feature: gene Location: 1884-2219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)