myRT

myRT report for GCA_012977965.1_ASM1297796v1

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Seq: JABBJO010000016.1 Escherichia coli strain C06 Sample_C06_R1_contig_16_consensus, whole genome shotgun sequence (35760 bp)
Overview 1 RT 1: 11279-15526 bp Neighborhood of RT #1 [11279, 15526] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 11279-11590 bp Feature: domain Description: InsE Location: 11282-11573 bp Feature: domain Description: InsE Location: 1 1 282-1 1 573 bp Feature: gene Location: 11614-12003 bp Feature: gene Location: 12634-14157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12907-13639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2907-1 3639 bp Feature: domain Description: GIIM Note: maturase Location: 13714-13912 bp Feature: domain Description: GIIM Note: maturase Location: 1 371 4-1 391 2 bp Feature: gene Location: 14286-14726 bp Feature: domain Description: PHA02517 Location: 14289-14691 bp Feature: domain Description: PHA0251 7 Location: 1 4289-1 4691 bp Feature: gene Location: 14903-15526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JABBJO010000300.1 Escherichia coli strain C06 Sample_C06_R1_contig_350_consensus, whole genome shotgun sequence (246 bp)
Overview 1 RT 1: 2-245 bp Neighborhood of RT #1 [2, 244] RVT-GII Feature: gene Location: 2-244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-2 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABBJO010000009.1 Escherichia coli strain C06 Sample_C06_R1_contig_9_consensus, whole genome shotgun sequence (261632 bp)
Overview 1 RT 1: 242248-249530 bp Neighborhood of RT #1 [242248, 249604] Psu PRK09678 RVT-UG8 RVT-UG3 PRK09692 Arm-DNA-bind_3 INT_P4_C Feature: gene Location: 242248-242802 bp Feature: domain Description: Psu Location: 242272-242782 bp Feature: domain Description: Psu Location: 242272-242782 bp Feature: gene Location: 242804-243076 bp Feature: domain Description: PRK09678 Location: 242813-242981 bp Feature: domain Description: PRK09678 Location: 242813 -242981 bp Feature: gene Location: 243525-245528 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 244020-244467 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 244020-244467 bp Feature: gene Location: 245532-246728 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 245817-246279 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 245817-246279 bp Feature: gene Location: 246730-247908 bp Feature: domain Description: PRK09692 Location: 246736-247894 bp Feature: domain Description: PRK09692 Location: 24673 6-247894 bp Feature: gene Location: 248282-249604 bp Feature: domain Description: Arm-DNA-bind_3 Location: 248306-248573 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2483 06-248573 bp Feature: domain Description: INT_P4_C Location: 248939-249530 bp Feature: domain Description: INT_P4_C Location: 24893 9-24953 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG8, RVT-UG3, PRK09692 (Integrase; provisional), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801)