myRT

myRT report for GCA_012985245.1_ASM1298524v1

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Seq: JABELA010000131.1 Corallococcus exiguus strain AB051 NODE_131_length_25331_cov_33.3746, whole genome shotgun sequence (25331 bp)
Overview 1 RT 1: 2234-10479 bp Neighborhood of RT #1 [2234, 10550] AraC_binding AraC YdfG RVT-Retrons PLDc_N_DEXD_b1 SSL2 DUF3427 AmpC Feature: gene Location: 2234-3052 bp Feature: domain Description: AraC_binding Location: 2327-2684 bp Feature: domain Description: AraC_binding Location: 2327-2684 bp Feature: domain Description: AraC Location: 2741-3044 bp Feature: domain Description: AraC Location: 2741 -3044 bp Feature: gene Location: 3229-3966 bp Feature: domain Description: YdfG Location: 3232-3961 bp Feature: domain Description: YdfG Location: 3232-3961 bp Feature: gene Location: 4208-5554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4670-5324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4670-5324 bp Feature: gene Location: 5610-8705 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 6018-6438 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 601 8-6438 bp Feature: domain Description: SSL2 Location: 6531-7626 bp Feature: domain Description: SSL2 Location: 6531 -7626 bp Feature: domain Description: DUF3427 Location: 8154-8688 bp Feature: domain Description: DUF3427 Location: 81 54-8688 bp Feature: gene Location: 8793-10550 bp Feature: domain Description: AmpC Location: 9561-10479 bp Feature: domain Description: AmpC Location: 9561 -1 0479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_binding (pfam02311), AraC (COG2207), YdfG (COG4221), RVT-Retrons, PLDc_N_DEXD_b1 (cd09203), SSL2 (COG1061), DUF3427 (pfam11907), AmpC (COG1680)

Seq: JABELA010000134.1 Corallococcus exiguus strain AB051 NODE_134_length_25153_cov_36.008, whole genome shotgun sequence (25153 bp)
Overview 1 RT 1: 6213-19075 bp Neighborhood of RT #1 [6213, 19140] BetA BetA BetA DAP2 RVT-Retrons SWIM WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 6213-7736 bp Feature: domain Description: BetA Location: 6219-6729 bp Feature: domain Description: BetA Location: 62 19-672 9 bp Feature: domain Description: BetA Location: 6840-7146 bp Feature: domain Description: BetA Location: 6840-7146 bp Feature: domain Description: BetA Location: 7281-7719 bp Feature: domain Description: BetA Location: 72 81-7719 bp Feature: gene Location: 7909-8898 bp Feature: domain Description: DAP2 Location: 8050-8788 bp Feature: domain Description: DAP2 Location: 8050-8788 bp Feature: gene Location: 8906-10351 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9461-10103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9461-10103 bp Feature: gene Location: 10751-12610 bp Feature: domain Description: SWIM Location: 12221-12305 bp Feature: domain Description: SWIM Location: 12 2 2 1-12 305 bp Feature: gene Location: 12607-19140 bp Feature: domain Description: WD40 Location: 12637-13522 bp Feature: domain Description: WD40 Location: 12 637-1352 2 bp Feature: domain Description: HEAT_2 Location: 13636-13843 bp Feature: domain Description: HEAT_2 Location: 13636-13843 bp Feature: domain Description: HEAT_2 Location: 14446-14695 bp Feature: domain Description: HEAT_2 Location: 14446-14695 bp Feature: domain Description: HEAT_2 Location: 14737-14941 bp Feature: domain Description: HEAT_2 Location: 14737-14941 bp Feature: domain Description: HEAT_2 Location: 15544-15757 bp Feature: domain Description: HEAT_2 Location: 15544-15757 bp Feature: domain Description: HEAT_2 Location: 15889-16012 bp Feature: domain Description: HEAT_2 Location: 15889-16012 bp Feature: domain Description: HEAT_2 Location: 16426-16615 bp Feature: domain Description: HEAT_2 Location: 1642 6-16615 bp Feature: domain Description: HEAT_2 Location: 16660-16870 bp Feature: domain Description: HEAT_2 Location: 16660-16870 bp Feature: domain Description: HEAT_2 Location: 16921-17134 bp Feature: domain Description: HEAT_2 Location: 1692 1-17134 bp Feature: domain Description: HEAT_2 Location: 17362-17569 bp Feature: domain Description: HEAT_2 Location: 17362 -17569 bp Feature: domain Description: HEAT_2 Location: 17890-18127 bp Feature: domain Description: HEAT_2 Location: 17890-1812 7 bp Feature: domain Description: HEAT_2 Location: 18631-18784 bp Feature: domain Description: HEAT_2 Location: 18631-18784 bp Feature: domain Description: HEAT_2 Location: 18922-19075 bp Feature: domain Description: HEAT_2 Location: 1892 2 -19075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), WD40 (smart00320), HEAT_2 (pfam13646), BetA (COG2303), DAP2 (COG1506), RVT-Retrons

Seq: JABELA010000048.1 Corallococcus exiguus strain AB051 NODE_48_length_39449_cov_37.5108, whole genome shotgun sequence (39449 bp)
Overview 1 RT 1: 34859-39332 bp Neighborhood of RT #1 [34859, 39367] GlnA RVT-GII HTH_XRE TnpB_IS66 Feature: gene Location: 34859-36298 bp Feature: domain Description: GlnA Location: 34976-36248 bp Feature: domain Description: GlnA Location: 3 4976-3 6248 bp Feature: gene Location: 36388-36723 bp Feature: gene Location: 36876-38066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36984-37674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6984-3 7674 bp Feature: gene Location: 38800-39114 bp Feature: domain Description: HTH_XRE Location: 38836-38968 bp Feature: domain Description: HTH_XRE Location: 3 883 6-3 8968 bp Feature: gene Location: 39122-39367 bp Feature: domain Description: TnpB_IS66 Location: 39149-39332 bp Feature: domain Description: TnpB_IS66 Location: 3 9149-3 93 3 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA (TIGR00653), RVT-GII, HTH_XRE (smart00530), TnpB_IS66 (pfam05717)