myRT

myRT report for GCA_012985365.1_ASM1298536v1

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Seq: JAAQWG010000137.1 Pseudomonas veronii strain DSM 16272 137_5285_30.4731, whole genome shotgun sequence (5285 bp)
Overview 1 RT 1: 181-3644 bp Neighborhood of RT #1 [181, 3644] IS5 RVT-GII GIIM IS5 Feature: gene Location: 181-720 bp Feature: domain Description: IS5 Location: 370-697 bp Feature: domain Description: IS5 Location: 370-697 bp Feature: gene Location: 1076-1216 bp Feature: gene Location: 1222-2481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1426-2083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 426-2083 bp Feature: domain Description: GIIM Note: maturase Location: 2161-2383 bp Feature: domain Description: GIIM Note: maturase Location: 21 61 -2383 bp Feature: gene Location: 2391-3011 bp Feature: domain Description: IS5 Location: 2541-2985 bp Feature: domain Description: IS5 Location: 2541 -2985 bp Feature: gene Location: 3441-3644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: JAAQWG010000159.1 Pseudomonas veronii strain DSM 16272 159_2277_49.453, whole genome shotgun sequence (2277 bp)
Overview 1 RT 1: 2-1965 bp Neighborhood of RT #1 [2, 2183] RVT-GII GIIM Feature: gene Location: 2-166 bp Feature: gene Location: 272-478 bp Feature: gene Location: 660-2183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933-1665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933-1665 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1965 bp Feature: domain Description: GIIM Note: maturase Location: 1740-1965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAQWG010000002.1 Pseudomonas veronii strain DSM 16272 2_255876_31.695, whole genome shotgun sequence (255876 bp)
Overview 1 RT 1: 131969-139601 bp Neighborhood of RT #1 [131969, 139606] LTA_synthase COG3907 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 131969-133918 bp Feature: domain Description: LTA_synthase Location: 132797-133607 bp Feature: domain Description: LTA_synthase Location: 13 2797-13 3 607 bp Feature: gene Location: 133970-134707 bp Feature: domain Description: COG3907 Location: 133991-134681 bp Feature: domain Description: COG3 907 Location: 13 3 991-13 4681 bp Feature: gene Location: 134887-136578 bp Feature: domain Description: RVT_N Location: 134941-135181 bp Feature: domain Description: RVT_N Location: 13 4941-13 5181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135229-135874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 5229-13 5874 bp Feature: domain Description: GIIM Note: maturase Location: 135925-136159 bp Feature: domain Description: GIIM Note: maturase Location: 13 5925-13 6159 bp Feature: domain Description: HNHc Note: nucleases Location: 136378-136531 bp Feature: domain Description: HNHc Note: nucleases Location: 13 63 78-13 653 1 bp Feature: gene Location: 137613-139259 bp Feature: domain Description: groEL Location: 137619-139242 bp Feature: domain Description: groEL Location: 13 7619-13 9242 bp Feature: gene Location: 139310-139606 bp Feature: domain Description: groES Location: 139319-139601 bp Feature: domain Description: groES Location: 13 93 19-13 9601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LTA_synthase (cd16015), COG3907 (Membrane-associated enzyme, PAP2 (acid phosphatase) superfamily ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: JAAQWG010000041.1 Pseudomonas veronii strain DSM 16272 41_68865_29.8918, whole genome shotgun sequence (68865 bp)
Overview 1 RT 1: 13653-16329 bp Neighborhood of RT #1 [13653, 16355] hip RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 13653-13949 bp Feature: domain Description: hip Location: 13656-13935 bp Feature: domain Description: hip Location: 13656-13935 bp Feature: gene Location: 14081-14365 bp Feature: gene Location: 14568-15374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14637-14958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 637-14 958 bp Feature: domain Description: GIIM Note: maturase Location: 15012-15234 bp Feature: domain Description: GIIM Note: maturase Location: 15012-15234 bp Feature: gene Location: 15621-15977 bp Feature: gene Location: 16164-16355 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16215-16329 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 16215-16329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hip (TIGR00988), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: JAAQWG010000004.1 Pseudomonas veronii strain DSM 16272 4_207398_31.6263, whole genome shotgun sequence (207398 bp)
Overview 1 RT 1: 108171-111459 bp Neighborhood of RT #1 [108171, 111459] Avd_like RVT-DGRs Feature: gene Location: 108171-108758 bp Feature: gene Location: 108816-109169 bp Feature: domain Description: Avd_like Location: 108843-109149 bp Feature: domain Description: Avd_like Location: 108843-109149 bp Feature: gene Location: 109383-110651 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 109632-110316 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 109632-110316 bp Feature: gene Location: 110584-111024 bp Feature: gene Location: 111238-111459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: JAAQWG010000051.1 Pseudomonas veronii strain DSM 16272 51_53287_32.1052, whole genome shotgun sequence (53287 bp)
Overview 1 RT 1: 22722-27380 bp Neighborhood of RT #1 [22722, 27409] DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 22722-23108 bp Feature: gene Location: 23139-23273 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 23145-23256 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 23145-23256 bp Feature: gene Location: 23465-25126 bp Feature: domain Description: RVT_N Location: 23510-23753 bp Feature: domain Description: RVT_N Location: 23510-23753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23798-24434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23798-24434 bp Feature: domain Description: GIIM Note: maturase Location: 24491-24719 bp Feature: domain Description: GIIM Note: maturase Location: 24491-24719 bp Feature: gene Location: 25684-27051 bp Feature: domain Description: LZ_Tnp_IS66 Location: 25849-26062 bp Feature: domain Description: LZ_Tnp_IS6 6 Location: 25849-26 06 2 bp Feature: domain Description: zf-IS66 Location: 26089-26215 bp Feature: domain Description: zf-IS6 6 Location: 26 089-26 215 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26257-27031 bp Feature: domain Description: DDE_Tnp_IS6 6 Location: 26 257-27031 bp Feature: gene Location: 27074-27409 bp Feature: domain Description: TnpB_IS66 Location: 27092-27380 bp Feature: domain Description: TnpB_IS6 6 Location: 27092-27380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: JAAQWG010000052.1 Pseudomonas veronii strain DSM 16272 52_52660_405.087, whole genome shotgun sequence (52660 bp)
Overview 1 RT 1: 20941-23638 bp 2 RT 2: 42711-49377 bp Neighborhood of RT #1 [20941, 23638] RVT-GII GIIM Neighborhood of RT #2 [42711, 49388] CPSase_L_D3 RVT_N RVT-GII GIIM HNH DUF4158 DDE_Tnp_Tn3 PinE Feature: gene Location: 20941-21153 bp Feature: gene Location: 21288-21482 bp Feature: gene Location: 21532-22953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21889-22504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21889-22504 bp Feature: domain Description: GIIM Note: maturase Location: 22561-22774 bp Feature: domain Description: GIIM Note: maturase Location: 22561-227 7 4 bp Feature: gene Location: 23103-23273 bp Feature: gene Location: 23426-23638 bp Feature: gene Location: 42711-43433 bp Feature: domain Description: CPSase_L_D3 Location: 42768-42855 bp Feature: domain Description: CPSase_L_D3 Location: 427 68-42855 bp Feature: gene Location: 43637-43801 bp Feature: gene Location: 44026-45687 bp Feature: domain Description: RVT_N Location: 44071-44314 bp Feature: domain Description: RVT_N Location: 4407 1-44314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44359-44995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44359-44995 bp Feature: domain Description: GIIM Note: maturase Location: 45046-45280 bp Feature: domain Description: GIIM Note: maturase Location: 45046-45280 bp Feature: domain Description: HNH Note: nucleases Location: 45532-45655 bp Feature: domain Description: HNH Note: nucleases Location: 45532-45655 bp Feature: gene Location: 45794-48604 bp Feature: domain Description: DUF4158 Location: 45797-46145 bp Feature: domain Description: DUF4158 Location: 457 97 -46145 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 47378-48536 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 47 37 8-48536 bp Feature: gene Location: 48765-49388 bp Feature: domain Description: PinE Location: 48873-49377 bp Feature: domain Description: PinE Location: 4887 3-4937 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CPSase_L_D3 (smart01096), RVT_N (pfam13655), HNH (pfam01844), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), PinE (COG1961)

Seq: JAAQWG010000084.1 Pseudomonas veronii strain DSM 16272 84_23525_28.0461, whole genome shotgun sequence (23525 bp)
Overview 1 RT 1: 15945-21686 bp Neighborhood of RT #1 [15945, 21686] CcmA CcmA ABC2_membrane_3 ABC2_membrane_3 RVT-GII RVT_N Feature: gene Location: 15945-18692 bp Feature: domain Description: CcmA Location: 15975-16665 bp Feature: domain Description: CcmA Location: 15975-16665 bp Feature: domain Description: CcmA Location: 16767-17442 bp Feature: domain Description: CcmA Location: 16767-17442 bp Feature: domain Description: ABC2_membrane_3 Location: 17658-18666 bp Feature: domain Description: ABC2_membrane_3 Location: 17658 -18 666 bp Feature: gene Location: 18694-19809 bp Feature: domain Description: ABC2_membrane_3 Location: 18769-19783 bp Feature: domain Description: ABC2_membrane_3 Location: 18 769-1978 3 bp Feature: gene Location: 20166-20615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20175-20385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20175-2038 5 bp Feature: gene Location: 21220-21432 bp Feature: domain Description: RVT_N Location: 21265-21403 bp Feature: domain Description: RVT_N Location: 21265-21403 bp Feature: gene Location: 21558-21686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), ABC2_membrane_3 (pfam12698), RVT-GII, RVT_N (pfam13655)

Seq: JAAQWG010000087.1 Pseudomonas veronii strain DSM 16272 87_21507_31.1165, whole genome shotgun sequence (21507 bp)
Overview 1 RT 1: 15946-18446 bp Neighborhood of RT #1 [15946, 19180] RVT-GII Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 15946-16338 bp Feature: gene Location: 16376-16558 bp Feature: gene Location: 16606-16968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16612-16843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16612-16843 bp Feature: gene Location: 17109-17291 bp Feature: gene Location: 17288-19180 bp Feature: domain Description: Resolvase Location: 17309-17747 bp Feature: domain Description: Resolvase Location: 17309 -17747 bp Feature: domain Description: Recombinase Location: 17843-18200 bp Feature: domain Description: Recombinase Location: 17843-18200 bp Feature: domain Description: Zn_ribbon_recom Location: 18242-18446 bp Feature: domain Description: Zn_ribbon_recom Location: 18242-18446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)