myRT

myRT report for GCA_012985375.1_ASM1298537v1

Download annotations/find similar RTs

Seq: JAAQWH010000011.1 Pseudomonas sp. WS 5406 11_236437_27.8398, whole genome shotgun sequence (236437 bp)
Overview 1 RT 1: 176565-181816 bp Neighborhood of RT #1 [176565, 181836] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 176565-176900 bp Feature: domain Description: TnpB_IS66 Location: 176583-176871 bp Feature: domain Description: TnpB_IS66 Location: 1 76583-1 76871 bp Feature: gene Location: 176962-178290 bp Feature: domain Description: LZ_Tnp_IS66 Location: 177094-177301 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 77094-1 77301 bp Feature: domain Description: zf-IS66 Location: 177340-177454 bp Feature: domain Description: zf-IS66 Location: 1 77340-1 77454 bp Feature: domain Description: DDE_Tnp_IS66 Location: 177496-178270 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 77496-1 78270 bp Feature: gene Location: 178848-180509 bp Feature: RT Description: RVT_N Location: 178893-179136 bp Feature: RT Description: RVT_N Location: 1 78893-1 791 36 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179181-179817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 791 81 -1 7981 7 bp Feature: domain Description: GIIM Note: maturase Location: 179874-180102 bp Feature: domain Description: GIIM Note: maturase Location: 1 79874-1 801 02 bp Feature: gene Location: 180701-180835 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 180707-180818 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 80707-1 8081 8 bp Feature: gene Location: 180874-181836 bp Feature: domain Description: ACR3 Location: 180889-181816 bp Feature: domain Description: ACR3 Location: 1 80889-1 81 81 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)