myRT

myRT report for GCA_012985715.1_ASM1298571v1

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Seq: JAAQWV010000023.1 Pseudomonas sp. WS 5051 23_50837_9.40099, whole genome shotgun sequence (50837 bp)
Overview 1 RT 1: 309-2949 bp 2 RT 2: 45057-48942 bp Neighborhood of RT #1 [309, 2949] RVT_N RVT-GII GIIM Neighborhood of RT #2 [45057, 48942] TnpB_IS66 RVT-GII GIIM Feature: gene Location: 309-1793 bp Feature: RT Description: RVT_N Location: 384-624 bp Feature: RT Description: RVT_N Location: 384-624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-1314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 672-1 31 4 bp Feature: domain Description: GIIM Note: maturase Location: 1365-1599 bp Feature: domain Description: GIIM Note: maturase Location: 1 365-1 599 bp Feature: gene Location: 1834-2064 bp Feature: gene Location: 2347-2949 bp Feature: gene Location: 45057-45416 bp Feature: domain Description: TnpB_IS66 Location: 45087-45381 bp Feature: domain Description: TnpB_IS66 Location: 45087-45381 bp Feature: gene Location: 45608-46636 bp Feature: gene Location: 46793-48199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47111-47774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 1 1 -47774 bp Feature: domain Description: GIIM Note: maturase Location: 47843-48053 bp Feature: domain Description: GIIM Note: maturase Location: 47843-48053 bp Feature: gene Location: 48201-48557 bp Feature: gene Location: 48745-48942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: JAAQWV010000003.1 Pseudomonas sp. WS 5051 3_489613_33.5226, whole genome shotgun sequence (489613 bp)
Overview 1 RT 1: 45529-55436 bp Neighborhood of RT #1 [45529, 55453] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS_9 PRK10060 RVT-GII Intron_maturas2 HNHc COG3177 Lrp Feature: gene Location: 45529-47376 bp Feature: domain Description: PRK05658 Location: 45541-47374 bp Feature: domain Description: PRK05658 Location: 45541-47374 bp Feature: gene Location: 47488-50850 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 47599-48256 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 47599-482 56 bp Feature: domain Description: PRK09776 Location: 48535-48808 bp Feature: domain Description: PRK09776 Location: 48535-48808 bp Feature: domain Description: PAS_9 Location: 48844-49141 bp Feature: domain Description: PAS_9 Location: 48844-49141 bp Feature: domain Description: PRK10060 Location: 49192-50803 bp Feature: domain Description: PRK10060 Location: 49192 -50803 bp Feature: gene Location: 51560-53410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51827-52646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5182 7-52 646 bp Feature: domain Description: Intron_maturas2 Location: 52739-53051 bp Feature: domain Description: Intron_maturas2 Location: 52 739-53051 bp Feature: domain Description: HNHc Note: nucleases Location: 53183-53336 bp Feature: domain Description: HNHc Note: nucleases Location: 53183-53336 bp Feature: gene Location: 53802-54968 bp Feature: domain Description: COG3177 Location: 53817-54912 bp Feature: domain Description: COG3177 Location: 53817-54912 bp Feature: gene Location: 55001-55453 bp Feature: domain Description: Lrp Location: 55025-55436 bp Feature: domain Description: Lrp Location: 5502 5-55436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS_9 (pfam13426), PRK10060 (cyclic di-GMP phosphodiesterase), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG3177 (Fic family protein ), Lrp (COG1522)