myRT

myRT report for GCA_012985775.1_ASM1298577v1

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Seq: JAAQXA010000012.1 Pseudomonas sp. WS 5011 12_149659_49.7259, whole genome shotgun sequence (149659 bp)
Overview 1 RT 1: 142725-148647 bp Neighborhood of RT #1 [142725, 148676] DNA_BRE_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 142725-143669 bp Feature: domain Description: DNA_BRE_C Location: 143070-143475 bp Feature: domain Description: DNA_BRE_C Location: 1 43070-1 43475 bp Feature: gene Location: 144541-144714 bp Feature: gene Location: 144722-146395 bp Feature: RT Description: RVT_N Location: 144767-145010 bp Feature: RT Description: RVT_N Location: 1 44767-1 4501 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145055-145691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45055-1 45691 bp Feature: domain Description: GIIM Note: maturase Location: 145745-145976 bp Feature: domain Description: GIIM Note: maturase Location: 1 45745-1 45976 bp Feature: gene Location: 146951-148279 bp Feature: domain Description: LZ_Tnp_IS66 Location: 147077-147296 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 47077-1 47296 bp Feature: domain Description: zf-IS66 Location: 147317-147443 bp Feature: domain Description: zf-IS66 Location: 1 4731 7-1 47443 bp Feature: domain Description: DDE_Tnp_IS66 Location: 147485-148259 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 47485-1 48259 bp Feature: gene Location: 148341-148676 bp Feature: domain Description: TnpB_IS66 Location: 148359-148647 bp Feature: domain Description: TnpB_IS66 Location: 1 48359-1 48647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_BRE_C (cl00213), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: JAAQXA010000034.1 Pseudomonas sp. WS 5011 34_16326_49.6649, whole genome shotgun sequence (16326 bp)
Overview 1 RT 1: 4209-8513 bp Neighborhood of RT #1 [4209, 8513] DUF45 RVT-Retrons Feature: gene Location: 4209-4919 bp Feature: domain Description: DUF45 Location: 4275-4896 bp Feature: domain Description: DUF45 Location: 42 75-4896 bp Feature: gene Location: 4978-5535 bp Feature: gene Location: 5790-7058 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6216-6771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62 16-6771 bp Feature: gene Location: 7095-7373 bp Feature: gene Location: 7461-8513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF45 (pfam01863), RVT-Retrons