myRT

myRT report for GCA_012985955.1_ASM1298595v1

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Seq: JAAQXI010000018.1 Pseudomonas proteolytica strain WS 5147 18_108148_31.2348, whole genome shotgun sequence (108148 bp)
Overview 1 RT 1: 60216-63492 bp Neighborhood of RT #1 [60216, 63509] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 60216-60815 bp Feature: gene Location: 60867-61094 bp Feature: gene Location: 61105-62223 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61315-61999 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61 31 5-61 999 bp Feature: gene Location: 62478-62834 bp Feature: domain Description: Avd_like Location: 62505-62814 bp Feature: domain Description: Avd_like Location: 62505-6281 4 bp Feature: gene Location: 62889-63509 bp Feature: domain Description: DUF1566 Location: 63135-63492 bp Feature: domain Description: DUF1 566 Location: 631 35-63492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: JAAQXI010000002.1 Pseudomonas proteolytica strain WS 5147 2_283595_30.6738, whole genome shotgun sequence (283595 bp)
Overview 1 RT 1: 74618-79205 bp Neighborhood of RT #1 [74618, 79216] COG3547 IS5 RVT-GII GIIM IS5 glyox_I Feature: gene Location: 74618-75643 bp Feature: domain Description: COG3547 Location: 74633-75584 bp Feature: domain Description: COG3547 Location: 74633-75584 bp Feature: gene Location: 75837-76376 bp Feature: domain Description: IS5 Location: 76026-76353 bp Feature: domain Description: IS5 Location: 7602 6-76353 bp Feature: gene Location: 76871-78124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77084-77741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77084-77741 bp Feature: domain Description: GIIM Note: maturase Location: 77819-78041 bp Feature: domain Description: GIIM Note: maturase Location: 77819-78041 bp Feature: gene Location: 78135-78485 bp Feature: domain Description: IS5 Location: 78207-78459 bp Feature: domain Description: IS5 Location: 782 07-78459 bp Feature: gene Location: 78782-79216 bp Feature: domain Description: glyox_I Location: 78800-79205 bp Feature: domain Description: glyox_I Location: 78800-792 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), IS5 (COG3039), RVT-GII, GIIM (pfam08388), glyox_I (TIGR00068)

Seq: JAAQXI010000009.1 Pseudomonas proteolytica strain WS 5147 9_170786_33.5425, whole genome shotgun sequence (170786 bp)
Overview 1 RT 1: 127771-133872 bp Neighborhood of RT #1 [127771, 133877] OmpR DUF2188 RVT_N RVT-GII GIIM HNH groEL groES Feature: gene Location: 127771-128454 bp Feature: domain Description: OmpR Location: 127774-128437 bp Feature: domain Description: OmpR Location: 127774-12843 7 bp Feature: gene Location: 128846-129070 bp Feature: domain Description: DUF2188 Location: 128864-129041 bp Feature: domain Description: DUF2188 Location: 128864-129041 bp Feature: gene Location: 129187-130848 bp Feature: RT Description: RVT_N Location: 129241-129481 bp Feature: RT Description: RVT_N Location: 129241-129481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129529-130174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129529-13 0174 bp Feature: domain Description: GIIM Note: maturase Location: 130225-130459 bp Feature: domain Description: GIIM Note: maturase Location: 13 0225-13 0459 bp Feature: domain Description: HNH Note: nucleases Location: 130699-130837 bp Feature: domain Description: HNH Note: nucleases Location: 13 0699-13 083 7 bp Feature: gene Location: 131885-133531 bp Feature: domain Description: groEL Location: 131891-133514 bp Feature: domain Description: groEL Location: 13 1891-13 3 514 bp Feature: gene Location: 133581-133877 bp Feature: domain Description: groES Location: 133590-133872 bp Feature: domain Description: groES Location: 13 3 590-13 3 872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), groEL (PRK12852), groES (PRK14533)