myRT

myRT report for GCA_012986075.1_ASM1298607v1

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Seq: JAAQXM010000052.1 Pseudomonas proteolytica strain WS 5060 52_40677_18.5853, whole genome shotgun sequence (40677 bp)
Overview 1 RT 1: 25741-30612 bp Neighborhood of RT #1 [25741, 30683] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C cztS_silS_copS Feature: gene Location: 25741-26076 bp Feature: domain Description: TnpB_IS66 Location: 25759-26047 bp Feature: domain Description: TnpB_IS66 Location: 25759-26047 bp Feature: gene Location: 26100-27509 bp Feature: domain Description: LZ_Tnp_IS66 Location: 26307-26520 bp Feature: domain Description: LZ_Tnp_IS66 Location: 26307-26520 bp Feature: domain Description: zf-IS66 Location: 26547-26673 bp Feature: domain Description: zf-IS66 Location: 26547-26673 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26715-27489 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2671 5-27489 bp Feature: gene Location: 28067-29728 bp Feature: domain Description: RVT_N Location: 28112-28355 bp Feature: domain Description: RVT_N Location: 281 1 2-28355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28400-29036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28400-29036 bp Feature: domain Description: GIIM Note: maturase Location: 29093-29321 bp Feature: domain Description: GIIM Note: maturase Location: 29093-29321 bp Feature: gene Location: 29920-30054 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 29926-30037 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 29926-30037 bp Feature: gene Location: 30201-30683 bp Feature: domain Description: cztS_silS_copS Location: 30207-30612 bp Feature: domain Description: cztS_silS_copS Location: 30207-3061 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), cztS_silS_copS (TIGR01386)

Seq: JAAQXM010000008.1 Pseudomonas proteolytica strain WS 5060 8_164816_17.1921, whole genome shotgun sequence (164816 bp)
Overview 1 RT 1: 70661-82139 bp Neighborhood of RT #1 [70661, 82147] HsdM COG0610 RVT-UG5 nitrilase COG3666 Feature: gene Location: 70661-72175 bp Feature: domain Description: HsdM Location: 70703-72065 bp Feature: domain Description: HsdM Location: 70703-72 065 bp Feature: gene Location: 73385-76435 bp Feature: domain Description: COG0610 Location: 73397-76394 bp Feature: domain Description: COG0610 Location: 73397-76394 bp Feature: gene Location: 76611-79622 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 77088-77583 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 77088-77583 bp Feature: domain Description: nitrilase Location: 78831-79521 bp Feature: domain Description: nitrilase Location: 78831-7952 1 bp Feature: gene Location: 79763-81877 bp Feature: gene Location: 81935-82147 bp Feature: domain Description: COG3666 Location: 81947-82139 bp Feature: domain Description: COG3666 Location: 81947-82 139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5, nitrilase (cl11424), COG3666 (Transposase )