myRT

myRT report for GCA_012986485.1_ASM1298648v1

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Seq: JAAQYF010000011.1 Psychrobacter sp. FME2 strain WS 5026 11_202095_42.6854, whole genome shotgun sequence (202095 bp)
Overview 1 RT 1: 46651-54463 bp Neighborhood of RT #1 [46651, 54468] OmpR LTA_synthase RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 46651-47334 bp Feature: domain Description: OmpR Location: 46654-47317 bp Feature: domain Description: OmpR Location: 46654-4731 7 bp Feature: gene Location: 47538-49487 bp Feature: domain Description: LTA_synthase Location: 48366-49176 bp Feature: domain Description: LTA_synthase Location: 48366-491 76 bp Feature: gene Location: 49756-51447 bp Feature: domain Description: RVT_N Location: 49810-50050 bp Feature: domain Description: RVT_N Location: 4981 0-50050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50098-50743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50098-50743 bp Feature: domain Description: GIIM Note: maturase Location: 50794-51028 bp Feature: domain Description: GIIM Note: maturase Location: 50794-51 028 bp Feature: domain Description: HNHc Note: nucleases Location: 51247-51400 bp Feature: domain Description: HNHc Note: nucleases Location: 51 247-51 400 bp Feature: gene Location: 52482-54125 bp Feature: domain Description: groEL Location: 52488-54108 bp Feature: domain Description: groEL Location: 52488-541 08 bp Feature: gene Location: 54175-54468 bp Feature: domain Description: groES Location: 54178-54463 bp Feature: domain Description: groES Location: 541 78-54463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), LTA_synthase (cd16015), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: JAAQYF010000033.1 Psychrobacter sp. FME2 strain WS 5026 33_16687_45.8777, whole genome shotgun sequence (16687 bp)
Overview 1 RT 1: 6611-15268 bp Neighborhood of RT #1 [6611, 15268] Phage_lysis Dam RVT-UG5 DUF4238 DUF4238 Feature: gene Location: 6611-7138 bp Feature: domain Description: Phage_lysis Location: 6743-7124 bp Feature: domain Description: Phage_lysis Location: 6743-712 4 bp Feature: gene Location: 7289-8083 bp Feature: domain Description: Dam Location: 7298-7961 bp Feature: domain Description: Dam Location: 72 98-7961 bp Feature: gene Location: 8568-11591 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 9072-9549 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 9072 -9549 bp Feature: gene Location: 11881-14289 bp Feature: domain Description: DUF4238 Location: 11908-12166 bp Feature: domain Description: DUF42 38 Location: 11908-12 166 bp Feature: domain Description: DUF4238 Location: 12304-12733 bp Feature: domain Description: DUF42 38 Location: 12 304-12 733 bp Feature: gene Location: 14792-15268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_lysis (pfam03245), Dam (pfam05869), RVT-UG5, DUF4238 (pfam14022)

Seq: JAAQYF010000004.1 Psychrobacter sp. FME2 strain WS 5026 4_328674_44.326, whole genome shotgun sequence (328674 bp)
Overview 1 RT 1: 239658-245423 bp Neighborhood of RT #1 [239658, 245473] RVT-DGRs PRK09692 queA Feature: gene Location: 239658-240770 bp Feature: gene Location: 241134-241364 bp Feature: gene Location: 241504-242703 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241720-242338 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241720-2423 3 8 bp Feature: gene Location: 242780-244045 bp Feature: domain Description: PRK09692 Location: 242804-243989 bp Feature: domain Description: PRK09692 Location: 242804-243 989 bp Feature: gene Location: 244412-245473 bp Feature: domain Description: queA Location: 244415-245423 bp Feature: domain Description: queA Location: 244415-245423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, PRK09692 (Integrase; provisional), queA (TIGR00113)