myRT

myRT report for GCA_012986535.1_ASM1298653v1

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Seq: JAAQYK010000002.1 Pseudomonas lactis strain WS 4997 2_818952_24.6034, whole genome shotgun sequence (818952 bp)
Overview 1 RT 1: 295733-305630 bp Neighborhood of RT #1 [295733, 306379] RVT-Retrons Trypsin_2 DUF4365 TPR TPR SMC_N SMC_N Feature: gene Location: 295733-296647 bp Feature: gene Location: 297033-297209 bp Feature: gene Location: 297224-298825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 297227-297779 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 297227-297779 bp Feature: domain Description: Trypsin_2 Location: 298172-298592 bp Feature: domain Description: Trypsin_2 Location: 2981 72-298592 bp Feature: gene Location: 299288-303253 bp Feature: domain Description: DUF4365 Location: 299378-299753 bp Feature: domain Description: DUF4365 Location: 299378-299753 bp Feature: domain Description: TPR Location: 300038-300353 bp Feature: domain Description: TPR Location: 300038-300353 bp Feature: domain Description: TPR Location: 301427-301604 bp Feature: domain Description: TPR Location: 301 427-301 604 bp Feature: gene Location: 303512-306379 bp Feature: domain Description: SMC_N Location: 303770-303983 bp Feature: domain Description: SMC_N Location: 303770-303983 bp Feature: domain Description: SMC_N Location: 305117-305630 bp Feature: domain Description: SMC_N Location: 3051 1 7-305630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), DUF4365 (pfam14280), TPR (smart00028), SMC_N (pfam02463)

Seq: JAAQYK010000004.1 Pseudomonas lactis strain WS 4997 4_620347_27.1623, whole genome shotgun sequence (620347 bp)
Overview 1 RT 1: 447297-452539 bp Neighborhood of RT #1 [447297, 452568] ACR3 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 447297-448259 bp Feature: domain Description: ACR3 Location: 447312-448239 bp Feature: domain Description: ACR3 Location: 447312 -4482 39 bp Feature: gene Location: 448298-448432 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 448304-448415 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 448304-448415 bp Feature: gene Location: 448624-450285 bp Feature: RT Description: RVT_N Location: 448669-448912 bp Feature: RT Description: RVT_N Location: 448669-448912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448957-449593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448957-449593 bp Feature: domain Description: GIIM Note: maturase Location: 449650-449878 bp Feature: domain Description: GIIM Note: maturase Location: 449650-449878 bp Feature: gene Location: 450843-452171 bp Feature: domain Description: LZ_Tnp_IS66 Location: 450975-451182 bp Feature: domain Description: LZ_Tnp_IS66 Location: 450975-451182 bp Feature: domain Description: zf-IS66 Location: 451221-451335 bp Feature: domain Description: zf-IS66 Location: 4512 2 1-451335 bp Feature: domain Description: DDE_Tnp_IS66 Location: 451377-452151 bp Feature: domain Description: DDE_Tnp_IS66 Location: 451377-452 151 bp Feature: gene Location: 452233-452568 bp Feature: domain Description: TnpB_IS66 Location: 452251-452539 bp Feature: domain Description: TnpB_IS66 Location: 452 2 51-452 539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACR3 (COG0798), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)