myRT

myRT report for GCA_012986615.1_ASM1298661v1

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Seq: JAAQYN010000013.1 Pseudomonas gessardii strain WS 5408 13_132571_10.3498, whole genome shotgun sequence (132571 bp)
Overview 1 RT 1: 6468-10376 bp Neighborhood of RT #1 [6468, 10435] RVT-Retrons CRISPR_Cas2 Feature: gene Location: 6468-6911 bp Feature: gene Location: 7058-7192 bp Feature: gene Location: 7611-9317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7761-8358 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7761 -8358 bp Feature: gene Location: 9680-10099 bp Feature: gene Location: 10163-10435 bp Feature: domain Description: CRISPR_Cas2 Location: 10178-10376 bp Feature: domain Description: CRISPR_Cas2 Location: 1 01 78-1 0376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CRISPR_Cas2 (pfam09827)

Seq: JAAQYN010000023.1 Pseudomonas gessardii strain WS 5408 23_98231_9.56102, whole genome shotgun sequence (98231 bp)
Overview 1 RT 1: 88455-92751 bp Neighborhood of RT #1 [88455, 92834] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 88455-88634 bp Feature: gene Location: 88818-89216 bp Feature: gene Location: 89366-90634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89579-90236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89579-902 36 bp Feature: domain Description: GIIM Note: maturase Location: 90314-90536 bp Feature: domain Description: GIIM Note: maturase Location: 90314-90536 bp Feature: gene Location: 91023-91664 bp Feature: domain Description: DUF772 Location: 91173-91368 bp Feature: domain Description: DUF772 Location: 91173-91368 bp Feature: gene Location: 92007-92834 bp Feature: domain Description: ABC_phnC Location: 92037-92751 bp Feature: domain Description: ABC_phnC Location: 92 037-92 751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: JAAQYN010000028.1 Pseudomonas gessardii strain WS 5408 28_87529_7.23887, whole genome shotgun sequence (87529 bp)
Overview 1 RT 1: 72907-76731 bp Neighborhood of RT #1 [72907, 76778] clpP tig RVT_N RVT-GII GIIM HNH Feature: gene Location: 72907-73542 bp Feature: domain Description: clpP Location: 72961-73534 bp Feature: domain Description: clpP Location: 72961-73 53 4 bp Feature: gene Location: 73635-74903 bp Feature: domain Description: tig Location: 73641-74874 bp Feature: domain Description: tig Location: 73 641-74874 bp Feature: gene Location: 75075-76778 bp Feature: domain Description: RVT_N Location: 75132-75375 bp Feature: domain Description: RVT_N Location: 7513 2-753 75 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75420-76056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75420-76056 bp Feature: domain Description: GIIM Note: maturase Location: 76107-76341 bp Feature: domain Description: GIIM Note: maturase Location: 76107-763 41 bp Feature: domain Description: HNH Note: nucleases Location: 76593-76731 bp Feature: domain Description: HNH Note: nucleases Location: 76593 -7673 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: JAAQYN010000032.1 Pseudomonas gessardii strain WS 5408 32_79685_12.9917, whole genome shotgun sequence (79685 bp)
Overview 1 RT 1: 13765-19114 bp Neighborhood of RT #1 [13765, 19164] INT_Rci_Hp1_C SLATT_5 RVT-UG17 FACL_FadD13-like Feature: gene Location: 13765-14634 bp Feature: domain Description: INT_Rci_Hp1_C Location: 14044-14503 bp Feature: domain Description: INT_Rci_Hp1_C Location: 14 04 4 -14 503 bp Feature: gene Location: 15045-15644 bp Feature: domain Description: SLATT_5 Location: 15108-15609 bp Feature: domain Description: SLATT_5 Location: 15108-15609 bp Feature: gene Location: 15644-17008 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 15872-16475 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 15872-164 75 bp Feature: gene Location: 17081-17302 bp Feature: gene Location: 17617-19164 bp Feature: domain Description: FACL_FadD13-like Location: 17644-19114 bp Feature: domain Description: FACL_FadD13-like Location: 1764 4 -19114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), SLATT_5 (pfam18160), RVT-UG17, FACL_FadD13-like (cd17631)

Seq: JAAQYN010000004.1 Pseudomonas gessardii strain WS 5408 4_238762_8.66903, whole genome shotgun sequence (238762 bp)
Overview 1 RT 1: 133753-141442 bp Neighborhood of RT #1 [133753, 141459] groES groEL RVT_N RVT-GII GIIM HNHc LTA_synthase OmpR Feature: gene Location: 133753-134049 bp Feature: domain Description: groES Location: 133762-134044 bp Feature: domain Description: groES Location: 133762-134044 bp Feature: gene Location: 134099-135751 bp Feature: domain Description: groEL Location: 134105-135725 bp Feature: domain Description: groEL Location: 134105 -135 725 bp Feature: gene Location: 136786-138477 bp Feature: domain Description: RVT_N Location: 136840-137080 bp Feature: domain Description: RVT_N Location: 136840-137080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137128-137773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137128-137773 bp Feature: domain Description: GIIM Note: maturase Location: 137824-138058 bp Feature: domain Description: GIIM Note: maturase Location: 137824-13805 8 bp Feature: domain Description: HNHc Note: nucleases Location: 138277-138430 bp Feature: domain Description: HNHc Note: nucleases Location: 138277-138430 bp Feature: gene Location: 138637-140574 bp Feature: domain Description: LTA_synthase Location: 139465-140275 bp Feature: domain Description: LTA_synthase Location: 139465 -140275 bp Feature: gene Location: 140776-141459 bp Feature: domain Description: OmpR Location: 140779-141442 bp Feature: domain Description: OmpR Location: 140779-141442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), LTA_synthase (cd16015), OmpR (COG0745)

Seq: JAAQYN010000009.1 Pseudomonas gessardii strain WS 5408 9_179348_8.30616, whole genome shotgun sequence (179348 bp)
Overview 1 RT 1: 135723-140511 bp Neighborhood of RT #1 [135723, 140511] RVT-GII GIIM PitA Feature: gene Location: 135723-136064 bp Feature: gene Location: 136123-136281 bp Feature: gene Location: 137054-138346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137315-137927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137315-137927 bp Feature: domain Description: GIIM Note: maturase Location: 137984-138206 bp Feature: domain Description: GIIM Note: maturase Location: 137984-138206 bp Feature: gene Location: 138504-139979 bp Feature: domain Description: PitA Location: 138546-139965 bp Feature: domain Description: PitA Location: 138546 -13996 5 bp Feature: gene Location: 140311-140511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PitA (COG0306)