myRT

myRT report for GCA_013002825.1_ASM1300282v1

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Seq: JABEPJ010000017.1 Pseudoalteromonas sp. NEC-BIFX-2020_002 NODE_17_length_90120_cov_47.361495, whole genome shotgun sequence (90120 bp)
Overview 1 RT 1: 3336-6389 bp Neighborhood of RT #1 [3336, 6397] RVT-GII GIIM ExbD Feature: gene Location: 3336-4016 bp Feature: gene Location: 4394-4555 bp Feature: gene Location: 4732-5598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5026-5596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5026-5596 bp Feature: gene Location: 5665-6087 bp Feature: domain Description: GIIM Note: maturase Location: 5689-5908 bp Feature: domain Description: GIIM Note: maturase Location: 5689-5908 bp Feature: gene Location: 6170-6397 bp Feature: domain Description: ExbD Location: 6191-6389 bp Feature: domain Description: ExbD Location: 61 91 -6389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ExbD (pfam02472)

Seq: JABEPJ010000001.1 Pseudoalteromonas sp. NEC-BIFX-2020_002 NODE_1_length_568524_cov_45.682036, whole genome shotgun sequence (568524 bp)
Overview 1 RT 1: 225669-232876 bp Neighborhood of RT #1 [225669, 232890] COG3324 RVT-GII GIIM HTH_XRE RVT-GII GIIM GbsR Feature: gene Location: 225669-226109 bp Feature: domain Description: COG3324 Location: 225759-226104 bp Feature: domain Description: COG332 4 Location: 2 2 5759-2 2 6104 bp Feature: gene Location: 226467-226631 bp Feature: gene Location: 226808-228019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227102-227726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 7102 -2 2 772 6 bp Feature: domain Description: GIIM Note: maturase Location: 227765-227975 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 7765-2 2 7975 bp Feature: gene Location: 228282-228722 bp Feature: domain Description: HTH_XRE Location: 228309-228471 bp Feature: domain Description: HTH_XRE Location: 2 2 8309-2 2 8471 bp Feature: gene Location: 229325-229516 bp Feature: gene Location: 229693-230874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229987-230611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 9987-2 30611 bp Feature: domain Description: GIIM Note: maturase Location: 230650-230851 bp Feature: domain Description: GIIM Note: maturase Location: 2 30650-2 30851 bp Feature: gene Location: 231173-231841 bp Feature: gene Location: 232345-232890 bp Feature: domain Description: GbsR Location: 232348-232876 bp Feature: domain Description: GbsR Location: 2 32 348-2 32 876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3324 (Predicted enzyme related to lactoylglutathione lyase ), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), GbsR (COG1510)

Seq: JABEPJ010000029.1 Pseudoalteromonas sp. NEC-BIFX-2020_002 NODE_29_length_39980_cov_49.358894, whole genome shotgun sequence (39980 bp)
Overview 1 RT 1: 3-3242 bp Neighborhood of RT #1 [3, 3242] DUF772 RVT-GII GIIM Feature: gene Location: 3-698 bp Feature: domain Description: DUF772 Location: 168-375 bp Feature: domain Description: DUF772 Location: 168-3 75 bp Feature: gene Location: 928-2217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1183-1852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1183 -1852 bp Feature: domain Description: GIIM Note: maturase Location: 1945-2137 bp Feature: domain Description: GIIM Note: maturase Location: 1945-213 7 bp Feature: gene Location: 2392-2709 bp Feature: gene Location: 2862-3242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JABEPJ010000003.1 Pseudoalteromonas sp. NEC-BIFX-2020_002 NODE_3_length_348348_cov_49.790331, whole genome shotgun sequence (348348 bp)
Overview 1 RT 1: 262137-268879 bp Neighborhood of RT #1 [262137, 268879] Y2_Tnp RVT-UG12 INT_RitA_C_like INT_RitA_C_like RVT-Retrons HTH_XRE Feature: gene Location: 262137-262649 bp Feature: gene Location: 263286-263573 bp Feature: domain Description: Y2_Tnp Location: 263304-263373 bp Feature: domain Description: Y2_Tnp Location: 263304 -263373 bp Feature: gene Location: 263927-265537 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 264296-264719 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 264 296-264 719 bp Feature: gene Location: 265632-265970 bp Feature: gene Location: 265981-266271 bp Feature: gene Location: 266579-266830 bp Feature: domain Description: INT_RitA_C_like Location: 266585-266819 bp Feature: domain Description: INT_RitA_C_like Location: 266585-266819 bp Feature: gene Location: 266851-267093 bp Feature: domain Description: INT_RitA_C_like Location: 266929-267049 bp Feature: domain Description: INT_RitA_C_like Location: 266929-26704 9 bp Feature: gene Location: 267440-268399 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 267629-268160 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 267629-268160 bp Feature: gene Location: 268374-268685 bp Feature: domain Description: HTH_XRE Location: 268389-268551 bp Feature: domain Description: HTH_XRE Location: 268389-268551 bp Feature: gene Location: 268721-268879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), RVT-UG12, INT_RitA_C_like (cd01188), RVT-Retrons, HTH_XRE (smart00530)

Seq: JABEPJ010000049.1 Pseudoalteromonas sp. NEC-BIFX-2020_002 NODE_56_length_706_cov_48.056995, whole genome shotgun sequence (706 bp)
Overview 1 RT 1: 1-703 bp Neighborhood of RT #1 [1, 705] RVT-GII Feature: gene Location: 1-705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABEPJ010000051.1 Pseudoalteromonas sp. NEC-BIFX-2020_002 NODE_65_length_676_cov_43.207650, whole genome shotgun sequence (676 bp)
Overview 1 RT 1: 2-671 bp Neighborhood of RT #1 [2, 673] RVT-GII Feature: gene Location: 2-145 bp Feature: gene Location: 386-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-6 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABEPJ010000007.1 Pseudoalteromonas sp. NEC-BIFX-2020_002 NODE_7_length_231882_cov_47.260551, whole genome shotgun sequence (231882 bp)
Overview 1 RT 1: 74388-78224 bp Neighborhood of RT #1 [74388, 78224] Chordopox_A15 RAYT RAYT RVT-GII Feature: gene Location: 74388-74813 bp Feature: domain Description: Chordopox_A15 Location: 74598-74757 bp Feature: domain Description: Chordopox_A15 Location: 7 4598-7 47 57 bp Feature: gene Location: 75166-76140 bp Feature: domain Description: RAYT Location: 75208-75415 bp Feature: domain Description: RAYT Location: 7 5208-7 5415 bp Feature: domain Description: RAYT Location: 75571-75766 bp Feature: domain Description: RAYT Location: 7 557 1-7 57 66 bp Feature: gene Location: 76411-77118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76666-77056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 6666-7 7 056 bp Feature: gene Location: 77339-77518 bp Feature: gene Location: 77709-78224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Chordopox_A15 (pfam05846), RAYT (COG1943), RVT-GII