myRT

myRT report for GCA_013004275.1_ASM1300427v1

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Seq: JABERF010000070.1 Acinetobacter sp. ANC 4277 Contig103, whole genome shotgun sequence (7177 bp)
Overview 1 RT 1: 3-2058 bp Neighborhood of RT #1 [3, 2081] HTH_23 RVT-GII HigB-like_toxin VapI Feature: gene Location: 3-860 bp Feature: domain Description: HTH_23 Location: 24-168 bp Feature: domain Description: HTH_23 Location: 24-1 68 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306-861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306-861 bp Feature: gene Location: 1631-1774 bp Feature: domain Description: HigB-like_toxin Location: 1640-1772 bp Feature: domain Description: HigB-like_toxin Location: 1 640-1 772 bp Feature: gene Location: 1782-2081 bp Feature: domain Description: VapI Location: 1785-2058 bp Feature: domain Description: VapI Location: 1 785-2058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), RVT-GII, HigB-like_toxin (pfam05015), VapI (COG3093)

Seq: JABERF010000004.1 Acinetobacter sp. ANC 4277 Contig4, whole genome shotgun sequence (201927 bp)
Overview 1 RT 1: 55255-63113 bp Neighborhood of RT #1 [55255, 63113] SufI 2met_isocit_dHY RVT-Retrons DUF1451 Feature: gene Location: 55255-57408 bp Feature: domain Description: SufI Location: 55588-57352 bp Feature: domain Description: SufI Location: 55588-57352 bp Feature: gene Location: 57954-60572 bp Feature: domain Description: 2met_isocit_dHY Location: 57960-60558 bp Feature: domain Description: 2 met_isocit_dHY Location: 57960-60558 bp Feature: gene Location: 60631-62391 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60748-61468 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60748-61468 bp Feature: gene Location: 62726-62869 bp Feature: domain Description: DUF1451 Location: 62735-62855 bp Feature: domain Description: DUF1451 Location: 62 735-62 855 bp Feature: gene Location: 62961-63113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufI (COG2132), 2met_isocit_dHY (TIGR02333), RVT-Retrons, DUF1451 (pfam07295)

Seq: JABERF010000042.1 Acinetobacter sp. ANC 4277 Contig49, whole genome shotgun sequence (5566 bp)
Overview 1 RT 1: 2888-5541 bp Neighborhood of RT #1 [2888, 5564] LEA_4 LEA_4 RVT-UG2 DDE_Tnp_IS66_C Feature: gene Location: 2888-3418 bp Feature: gene Location: 3514-4107 bp Feature: domain Description: LEA_4 Location: 3751-3868 bp Feature: domain Description: LEA_4 Location: 3 751-3 868 bp Feature: domain Description: LEA_4 Location: 3976-4048 bp Feature: domain Description: LEA_4 Location: 3 976-4048 bp Feature: gene Location: 4334-5194 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4340-4859 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 43 40-4859 bp Feature: gene Location: 5391-5564 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5430-5541 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 543 0-5541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LEA_4 (pfam02987), RVT-UG2, DDE_Tnp_IS66_C (pfam13817)