myRT

myRT report for GCA_013004485.1_ASM1300448v1

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Seq: JABEQB010000025.1 Caldanaerobacter subterraneus strain 1523vc, whole genome shotgun sequence (36396 bp)
Overview 1 RT 1: 31504-35611 bp Neighborhood of RT #1 [31504, 35658] FGE-sulfatase Avd_like RVT-DGRs PHA00447 SLH Feature: gene Location: 31504-32739 bp Feature: domain Description: FGE-sulfatase Location: 31879-32209 bp Feature: domain Description: FGE-sulfatase Location: 31 879-32209 bp Feature: gene Location: 32806-33156 bp Feature: domain Description: Avd_like Location: 32833-33148 bp Feature: domain Description: Avd_like Location: 32833-331 48 bp Feature: gene Location: 33461-34555 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33671-34331 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 33671 -34331 bp Feature: gene Location: 34561-34800 bp Feature: gene Location: 34966-35658 bp Feature: domain Description: PHA00447 Location: 35053-35410 bp Feature: domain Description: PHA00447 Location: 35053-3541 0 bp Feature: domain Description: SLH Location: 35485-35611 bp Feature: domain Description: SLH Location: 35485-3561 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, PHA00447 (lysozyme), SLH (pfam00395)

Seq: JABEQB010000046.1 Caldanaerobacter subterraneus strain 1523vc, whole genome shotgun sequence (23020 bp)
Overview 1 RT 1: 15829-20032 bp Neighborhood of RT #1 [15829, 20046] YdiL group_II_RT_mat RVT-GII RVT-GII RimL Feature: gene Location: 15829-16737 bp Feature: domain Description: YdiL Location: 15877-16549 bp Feature: domain Description: YdiL Location: 15877-16549 bp Feature: gene Location: 16997-17266 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 17000-17171 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 17000-17171 bp Feature: gene Location: 17340-17786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17343-17706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17343-17706 bp Feature: gene Location: 17799-18188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18054-18174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18054-18174 bp Feature: gene Location: 18772-19377 bp Feature: gene Location: 19495-20046 bp Feature: domain Description: RimL Location: 19534-20032 bp Feature: domain Description: RimL Location: 19534-2 0032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdiL (COG1266), group_II_RT_mat (TIGR04416), RVT-GII, RimL (COG1670)

Seq: JABEQB010000008.1 Caldanaerobacter subterraneus strain 1523vc, whole genome shotgun sequence (71350 bp)
Overview 1 RT 1: 42480-46687 bp Neighborhood of RT #1 [42480, 46752] DUF3232 RVT-GII GIIM CpaA Feature: gene Location: 42480-42860 bp Feature: domain Description: DUF3232 Location: 42483-42858 bp Feature: domain Description: DUF3 23 2 Location: 42483 -42858 bp Feature: gene Location: 42902-43096 bp Feature: gene Location: 43225-44637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43573-44191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 573 -44191 bp Feature: domain Description: GIIM Note: maturase Location: 44242-44467 bp Feature: domain Description: GIIM Note: maturase Location: 44242-44467 bp Feature: gene Location: 45429-46280 bp Feature: gene Location: 46309-46752 bp Feature: domain Description: CpaA Location: 46321-46687 bp Feature: domain Description: CpaA Location: 463 21-46687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3232 (pfam11554), RVT-GII, GIIM (pfam08388), CpaA (COG4960)