myRT

myRT report for GCA_013007615.1_ASM1300761v1

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Seq: JABCRH010000113.1 Escherichia coli strain ATAVET2020-01 mcr-1 NODE_113_length_13973_cov_9.198830, whole genome shotgun sequence (13973 bp)
Overview 1 RT 1: 99-1593 bp Neighborhood of RT #1 [99, 1593] RVT-GII Feature: gene Location: 99-1091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213-900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3-900 bp Feature: gene Location: 1078-1386 bp Feature: gene Location: 1420-1593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABCRH010000257.1 Escherichia coli strain ATAVET2020-01 mcr-1 NODE_257_length_1179_cov_3.010456, whole genome shotgun sequence (1179 bp)
Overview 1 RT 1: 3-306 bp Neighborhood of RT #1 [3, 866] RVT-UG17 Feature: gene Location: 3-866 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 30-306 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 30-306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17

Seq: JABCRH010000270.1 Escherichia coli strain ATAVET2020-01 mcr-1 NODE_270_length_996_cov_5.275029, whole genome shotgun sequence (996 bp)
Overview 1 RT 1: 2-978 bp Neighborhood of RT #1 [2, 995] RVT-UG17 Psu Feature: gene Location: 2-427 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 239-428 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 23 9-428 bp Feature: gene Location: 750-995 bp Feature: domain Description: Psu Location: 771-978 bp Feature: domain Description: Psu Location: 771-978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, Psu (pfam07455)

Seq: JABCRH010000048.1 Escherichia coli strain ATAVET2020-01 mcr-1 NODE_48_length_32388_cov_9.261120, whole genome shotgun sequence (32388 bp)
Overview 1 RT 1: 11034-14173 bp Neighborhood of RT #1 [11034, 14238] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 11034-11318 bp Feature: gene Location: 11327-11728 bp Feature: domain Description: PHA02517 Location: 11330-11717 bp Feature: domain Description: PHA02517 Location: 11330-11717 bp Feature: gene Location: 11893-13416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12166-12898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12166-12898 bp Feature: domain Description: GIIM Note: maturase Location: 12973-13171 bp Feature: domain Description: GIIM Note: maturase Location: 12973-13171 bp Feature: gene Location: 13370-13795 bp Feature: gene Location: 14008-14238 bp Feature: domain Description: PHA02517 Location: 14032-14173 bp Feature: domain Description: PHA02517 Location: 14 032-14 173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JABCRH010000059.1 Escherichia coli strain ATAVET2020-01 mcr-1 NODE_59_length_27550_cov_7.591438, whole genome shotgun sequence (27550 bp)
Overview 1 RT 1: 23715-27379 bp Neighborhood of RT #1 [23715, 27379] umuC PRK10276 RVT-GII Feature: gene Location: 23715-24983 bp Feature: domain Description: umuC Location: 23718-24981 bp Feature: domain Description: umuC Location: 23718-24981 bp Feature: gene Location: 24983-25402 bp Feature: domain Description: PRK10276 Location: 24986-25400 bp Feature: domain Description: PRK10276 Location: 24986-25 400 bp Feature: gene Location: 25481-26968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25886-26576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 886-265 76 bp Feature: gene Location: 26993-27379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII