myRT

myRT report for GCA_013009155.1_ASM1300915v1

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Seq: JABCRW010000025.1 Streptococcus suis strain BJAY75 9CY_R1_(paired)_contig_25, whole genome shotgun sequence (3023 bp)
Overview 1 RT 1: 2-2058 bp Neighborhood of RT #1 [2, 2903] RVT-GII Feature: gene Location: 2-241 bp Feature: gene Location: 545-676 bp Feature: gene Location: 993-2903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1302-2058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 302-2058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABCRW010000049.1 Streptococcus suis strain BJAY75 9CY_R1_(paired)_contig_49, whole genome shotgun sequence (3326 bp)
Overview 1 RT 1: 83-2684 bp Neighborhood of RT #1 [83, 2686] Omega_Repress RVT-GII GIIM ArsD Feature: gene Location: 83-322 bp Feature: domain Description: Omega_Repress Location: 86-296 bp Feature: domain Description: Omega_Repress Location: 86-2 96 bp Feature: gene Location: 473-1750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-1292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677-12 92 bp Feature: domain Description: GIIM Note: maturase Location: 1346-1559 bp Feature: domain Description: GIIM Note: maturase Location: 1346-1559 bp Feature: gene Location: 2116-2295 bp Feature: gene Location: 2315-2686 bp Feature: domain Description: ArsD Location: 2318-2684 bp Feature: domain Description: ArsD Location: 2 318-2 684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArsD (pfam06953), RVT-GII, GIIM (pfam08388), Omega_Repress (pfam07764)

Seq: JABCRW010000057.1 Streptococcus suis strain BJAY75 9CY_R1_(paired)_contig_57, whole genome shotgun sequence (3208 bp)
Overview 1 RT 1: 3-3173 bp Neighborhood of RT #1 [3, 3205] RVT-GII Intron_maturas2 HNHc SF2_C_SNF Feature: gene Location: 3-212 bp Feature: gene Location: 245-2056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509-13 3 1 bp Feature: domain Description: Intron_maturas2 Location: 1400-1853 bp Feature: domain Description: Intron_maturas2 Location: 1400-1853 bp Feature: domain Description: HNHc Note: nucleases Location: 1871-2027 bp Feature: domain Description: HNHc Note: nucleases Location: 1871-2027 bp Feature: gene Location: 2296-2496 bp Feature: gene Location: 2621-3205 bp Feature: domain Description: SF2_C_SNF Location: 3026-3173 bp Feature: domain Description: SF2_C_SNF Location: 3 026-3 173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793)

Seq: JABCRW010000008.1 Streptococcus suis strain BJAY75 9CY_R1_(paired)_contig_8, whole genome shotgun sequence (97900 bp)
Overview 1 RT 1: 65902-72220 bp Neighborhood of RT #1 [65902, 72234] RAYT RVT-Retrons valS Feature: gene Location: 65902-66321 bp Feature: domain Description: RAYT Location: 65923-66301 bp Feature: domain Description: RAYT Location: 65923-66301 bp Feature: gene Location: 66428-66646 bp Feature: gene Location: 66960-67895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67074-67635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67074 -67635 bp Feature: gene Location: 68122-69495 bp Feature: gene Location: 69583-72234 bp Feature: domain Description: valS Location: 69589-72220 bp Feature: domain Description: valS Location: 69589-72220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-Retrons, valS (TIGR00422)